Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-ISSfl10 are separated by 35 nucleotides tnp-ISSfl10 and lpxM are separated by 180 nucleotides lpxM and virK are separated by 64 nucleotides
HEPCGN_09750: tnp-IS3 - IS3 family transposase, at 696,190 to 697,008
tnp-IS3
HEPCGN_09755: tnp-ISSfl10 - IS3 family ISSfl10 transposase, at 697,044 to 697,343
tnp-ISSfl10
HEPCGN_09760: lpxM - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 697,524 to 698,468
lpxM
HEPCGN_09765: virK - virulence factor VirK, at 698,533 to 699,483
virK
Position (kb) 697
698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 697.424 kb on - strand at 697.482 kb on - strand at 697.487 kb on + strand at 697.497 kb on + strand at 697.497 kb on + strand at 697.507 kb on - strand at 697.518 kb on - strand at 697.586 kb on - strand at 697.586 kb on - strand at 697.697 kb on + strand, within lpxM at 697.741 kb on - strand, within lpxM at 697.741 kb on - strand, within lpxM at 697.743 kb on - strand, within lpxM at 697.799 kb on - strand, within lpxM at 697.859 kb on - strand, within lpxM at 698.400 kb on - strand at 698.473 kb on + strand at 698.522 kb on + strand at 698.561 kb on - strand at 698.567 kb on + strand at 698.590 kb on - strand at 698.654 kb on - strand, within virK at 698.689 kb on + strand, within virK at 698.745 kb on - strand, within virK at 698.745 kb on - strand, within virK at 698.780 kb on + strand, within virK at 698.922 kb on + strand, within virK at 699.031 kb on - strand, within virK at 699.252 kb on - strand, within virK at 699.287 kb on - strand, within virK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 697,424 - +0.9 697,482 - +1.0 697,487 + -0.3 697,497 + +1.0 697,497 + -0.4 697,507 - +0.5 697,518 - +0.3 697,586 - -0.1 697,586 - +0.0 697,697 + lpxM HEPCGN_09760 0.18 -3.3 697,741 - lpxM HEPCGN_09760 0.23 -0.3 697,741 - lpxM HEPCGN_09760 0.23 +2.3 697,743 - lpxM HEPCGN_09760 0.23 -0.6 697,799 - lpxM HEPCGN_09760 0.29 -1.3 697,859 - lpxM HEPCGN_09760 0.35 -1.2 698,400 - -2.9 698,473 + -0.7 698,522 + -1.2 698,561 - +0.2 698,567 + +0.7 698,590 - -0.1 698,654 - virK HEPCGN_09765 0.13 -1.4 698,689 + virK HEPCGN_09765 0.16 -2.0 698,745 - virK HEPCGN_09765 0.22 +0.6 698,745 - virK HEPCGN_09765 0.22 -0.9 698,780 + virK HEPCGN_09765 0.26 +0.3 698,922 + virK HEPCGN_09765 0.41 +1.0 699,031 - virK HEPCGN_09765 0.52 +0.1 699,252 - virK HEPCGN_09765 0.76 -0.0 699,287 - virK HEPCGN_09765 0.79 -2.7
Or see this region's nucleotide sequence