Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sPS1 and HEPCGN_09720 are separated by 201 nucleotides HEPCGN_09720 and istA are separated by 139 nucleotides istA and tnp-IS3 are separated by 89 nucleotides
HEPCGN_09715: sPS1 - serine/threonine protein kinase, at 689,817 to 691,286
sPS1
HEPCGN_09720: HEPCGN_09720 - Prophage P4 integrase, at 691,488 to 691,763
_09720
HEPCGN_09725: istA - IS21 family transposase, at 691,903 to 692,565
istA
HEPCGN_09730: tnp-IS3 - IS3 family transposase, at 692,655 to 693,542
tnp-IS3
Position (kb) 691
692 Strain fitness (log2 ratio) -2
-1
0
1
2 at 690.498 kb on - strand, within sPS1 at 690.548 kb on + strand, within sPS1 at 690.548 kb on + strand, within sPS1 at 690.548 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.551 kb on + strand, within sPS1 at 690.552 kb on - strand, within sPS1 at 690.587 kb on + strand, within sPS1 at 690.596 kb on - strand, within sPS1 at 690.686 kb on + strand, within sPS1 at 690.687 kb on - strand, within sPS1 at 690.707 kb on + strand, within sPS1 at 690.762 kb on + strand, within sPS1 at 690.823 kb on + strand, within sPS1 at 690.891 kb on - strand, within sPS1 at 690.905 kb on - strand, within sPS1 at 691.059 kb on - strand, within sPS1 at 691.222 kb on + strand at 691.280 kb on + strand at 691.318 kb on + strand at 691.502 kb on + strand at 691.618 kb on + strand, within HEPCGN_09720 at 691.619 kb on - strand, within HEPCGN_09720 at 691.637 kb on + strand, within HEPCGN_09720 at 691.638 kb on - strand, within HEPCGN_09720 at 691.665 kb on + strand, within HEPCGN_09720 at 691.666 kb on - strand, within HEPCGN_09720 at 691.788 kb on - strand at 691.788 kb on - strand at 691.867 kb on - strand at 691.867 kb on - strand at 691.869 kb on - strand at 691.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 690,498 - sPS1 HEPCGN_09715 0.46 +0.5 690,548 + sPS1 HEPCGN_09715 0.50 -0.7 690,548 + sPS1 HEPCGN_09715 0.50 -1.0 690,548 + sPS1 HEPCGN_09715 0.50 +1.1 690,551 + sPS1 HEPCGN_09715 0.50 -0.5 690,551 + sPS1 HEPCGN_09715 0.50 -0.3 690,551 + sPS1 HEPCGN_09715 0.50 -0.1 690,551 + sPS1 HEPCGN_09715 0.50 -1.2 690,551 + sPS1 HEPCGN_09715 0.50 +0.9 690,552 - sPS1 HEPCGN_09715 0.50 +0.7 690,587 + sPS1 HEPCGN_09715 0.52 +1.3 690,596 - sPS1 HEPCGN_09715 0.53 -0.0 690,686 + sPS1 HEPCGN_09715 0.59 +0.5 690,687 - sPS1 HEPCGN_09715 0.59 +0.2 690,707 + sPS1 HEPCGN_09715 0.61 +1.0 690,762 + sPS1 HEPCGN_09715 0.64 +0.5 690,823 + sPS1 HEPCGN_09715 0.68 -0.2 690,891 - sPS1 HEPCGN_09715 0.73 +1.3 690,905 - sPS1 HEPCGN_09715 0.74 +1.1 691,059 - sPS1 HEPCGN_09715 0.84 -0.7 691,222 + -0.5 691,280 + +1.6 691,318 + +0.0 691,502 + -1.9 691,618 + HEPCGN_09720 0.47 +0.6 691,619 - HEPCGN_09720 0.47 -1.5 691,637 + HEPCGN_09720 0.54 +0.0 691,638 - HEPCGN_09720 0.54 -1.7 691,665 + HEPCGN_09720 0.64 -1.1 691,666 - HEPCGN_09720 0.64 -0.7 691,788 - +0.2 691,788 - +2.2 691,867 - -1.1 691,867 - +0.1 691,869 - +0.3 691,869 - +0.3
Or see this region's nucleotide sequence