Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt betA and HEPCGN_07615 are separated by 193 nucleotides HEPCGN_07615 and lutC are separated by 242 nucleotides lutC and ykgF overlap by 8 nucleotides
HEPCGN_07610: betA - choline dehydrogenase, at 262,817 to 264,505
betA
HEPCGN_07615: HEPCGN_07615 - hypothetical protein, at 264,699 to 265,199
_07615
HEPCGN_07620: lutC - lactate utilization protein C, at 265,442 to 266,137
lutC
HEPCGN_07625: ykgF - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 266,130 to 267,557
ykgF
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.723 kb on + strand, within betA at 263.724 kb on - strand, within betA at 263.733 kb on - strand, within betA at 263.894 kb on - strand, within betA at 263.900 kb on + strand, within betA at 263.924 kb on - strand, within betA at 263.924 kb on - strand, within betA at 263.927 kb on + strand, within betA at 263.927 kb on + strand, within betA at 263.927 kb on + strand, within betA at 263.927 kb on + strand, within betA at 263.928 kb on - strand, within betA at 263.929 kb on + strand, within betA at 264.057 kb on - strand, within betA at 264.337 kb on + strand at 264.349 kb on + strand at 264.449 kb on + strand at 264.449 kb on + strand at 264.449 kb on + strand at 264.532 kb on - strand at 264.543 kb on - strand at 264.559 kb on + strand at 264.560 kb on - strand at 264.561 kb on + strand at 264.696 kb on - strand at 264.785 kb on - strand, within HEPCGN_07615 at 264.822 kb on - strand, within HEPCGN_07615 at 264.865 kb on + strand, within HEPCGN_07615 at 264.935 kb on + strand, within HEPCGN_07615 at 265.009 kb on - strand, within HEPCGN_07615 at 265.124 kb on - strand, within HEPCGN_07615 at 265.215 kb on + strand at 265.331 kb on + strand at 265.420 kb on - strand at 265.434 kb on + strand at 265.549 kb on + strand, within lutC at 265.550 kb on - strand, within lutC at 265.732 kb on - strand, within lutC at 265.741 kb on - strand, within lutC at 265.741 kb on - strand, within lutC at 265.756 kb on + strand, within lutC at 265.775 kb on + strand, within lutC at 265.775 kb on + strand, within lutC at 265.775 kb on + strand, within lutC at 265.775 kb on + strand, within lutC at 265.776 kb on - strand, within lutC at 265.913 kb on + strand, within lutC at 265.914 kb on - strand, within lutC at 265.966 kb on + strand, within lutC at 266.040 kb on + strand, within lutC at 266.040 kb on + strand, within lutC at 266.040 kb on + strand, within lutC at 266.040 kb on + strand, within lutC at 266.041 kb on - strand, within lutC at 266.047 kb on + strand, within lutC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 263,723 + betA HEPCGN_07610 0.54 +0.0 263,724 - betA HEPCGN_07610 0.54 +1.9 263,733 - betA HEPCGN_07610 0.54 +0.7 263,894 - betA HEPCGN_07610 0.64 -1.4 263,900 + betA HEPCGN_07610 0.64 -1.2 263,924 - betA HEPCGN_07610 0.66 -0.3 263,924 - betA HEPCGN_07610 0.66 +1.4 263,927 + betA HEPCGN_07610 0.66 +0.7 263,927 + betA HEPCGN_07610 0.66 -0.3 263,927 + betA HEPCGN_07610 0.66 +0.9 263,927 + betA HEPCGN_07610 0.66 -1.6 263,928 - betA HEPCGN_07610 0.66 +2.2 263,929 + betA HEPCGN_07610 0.66 -0.0 264,057 - betA HEPCGN_07610 0.73 -0.2 264,337 + +0.7 264,349 + +0.0 264,449 + -0.4 264,449 + +0.1 264,449 + -1.2 264,532 - +1.1 264,543 - -0.2 264,559 + -2.0 264,560 - -2.4 264,561 + -0.3 264,696 - -1.4 264,785 - HEPCGN_07615 0.17 -0.2 264,822 - HEPCGN_07615 0.25 -1.8 264,865 + HEPCGN_07615 0.33 -0.5 264,935 + HEPCGN_07615 0.47 -0.3 265,009 - HEPCGN_07615 0.62 -0.7 265,124 - HEPCGN_07615 0.85 -0.7 265,215 + -0.2 265,331 + -0.7 265,420 - -1.2 265,434 + -0.6 265,549 + lutC HEPCGN_07620 0.15 +0.3 265,550 - lutC HEPCGN_07620 0.16 +0.0 265,732 - lutC HEPCGN_07620 0.42 +0.1 265,741 - lutC HEPCGN_07620 0.43 -1.3 265,741 - lutC HEPCGN_07620 0.43 +0.8 265,756 + lutC HEPCGN_07620 0.45 +0.5 265,775 + lutC HEPCGN_07620 0.48 +0.3 265,775 + lutC HEPCGN_07620 0.48 -0.4 265,775 + lutC HEPCGN_07620 0.48 +0.2 265,775 + lutC HEPCGN_07620 0.48 +0.4 265,776 - lutC HEPCGN_07620 0.48 +0.1 265,913 + lutC HEPCGN_07620 0.68 -0.8 265,914 - lutC HEPCGN_07620 0.68 -0.1 265,966 + lutC HEPCGN_07620 0.75 -0.5 266,040 + lutC HEPCGN_07620 0.86 -0.4 266,040 + lutC HEPCGN_07620 0.86 +0.4 266,040 + lutC HEPCGN_07620 0.86 -1.1 266,040 + lutC HEPCGN_07620 0.86 -0.8 266,041 - lutC HEPCGN_07620 0.86 -0.8 266,047 + lutC HEPCGN_07620 0.87 -0.8
Or see this region's nucleotide sequence