Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lon_P403L and clpX are separated by 187 nucleotides clpX and clpP are separated by 125 nucleotides clpP and tig are separated by 245 nucleotides
HEPCGN_06935: lon_P403L - Lon protease, at 121,998 to 124,352
_P403L
HEPCGN_06945: clpX - ATP-dependent protease ATP-binding subunit ClpX, at 124,540 to 125,814
clpX
HEPCGN_06950: clpP - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 125,940 to 126,563
clpP
HEPCGN_06955: tig - trigger factor, at 126,809 to 128,107
tig
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 123.645 kb on - strand, within lon_P403L at 123.667 kb on + strand, within lon_P403L at 123.668 kb on - strand, within lon_P403L at 123.668 kb on - strand, within lon_P403L at 123.701 kb on + strand, within lon_P403L at 123.836 kb on + strand, within lon_P403L at 123.836 kb on + strand, within lon_P403L at 123.837 kb on - strand, within lon_P403L at 123.881 kb on + strand, within lon_P403L at 124.124 kb on + strand at 124.124 kb on + strand at 124.267 kb on - strand at 124.352 kb on + strand at 124.365 kb on + strand at 124.366 kb on - strand at 124.417 kb on + strand at 124.417 kb on + strand at 124.427 kb on + strand at 124.435 kb on + strand at 124.435 kb on + strand at 124.435 kb on + strand at 124.435 kb on + strand at 124.436 kb on - strand at 124.436 kb on - strand at 124.436 kb on - strand at 124.436 kb on - strand at 124.438 kb on - strand at 124.473 kb on - strand at 124.495 kb on + strand at 124.496 kb on - strand at 124.519 kb on + strand at 124.519 kb on + strand at 124.520 kb on - strand at 124.520 kb on - strand at 124.577 kb on + strand at 124.687 kb on + strand, within clpX at 124.792 kb on - strand, within clpX at 125.050 kb on - strand, within clpX at 125.080 kb on - strand, within clpX at 125.098 kb on - strand, within clpX at 125.098 kb on - strand, within clpX at 125.098 kb on - strand, within clpX at 125.098 kb on - strand, within clpX at 125.102 kb on - strand, within clpX at 125.164 kb on - strand, within clpX at 125.297 kb on - strand, within clpX at 125.297 kb on - strand, within clpX at 125.357 kb on + strand, within clpX at 125.475 kb on + strand, within clpX at 125.537 kb on + strand, within clpX at 125.538 kb on - strand, within clpX at 125.538 kb on - strand, within clpX at 125.586 kb on - strand, within clpX at 125.682 kb on + strand, within clpX at 125.686 kb on + strand, within clpX at 125.687 kb on - strand at 125.687 kb on - strand at 125.710 kb on - strand at 125.711 kb on + strand at 125.711 kb on + strand at 125.712 kb on - strand at 125.712 kb on - strand at 125.712 kb on - strand at 125.712 kb on - strand at 125.805 kb on + strand at 125.914 kb on - strand at 125.914 kb on - strand at 125.914 kb on - strand at 125.978 kb on - strand at 126.275 kb on + strand, within clpP at 126.292 kb on + strand, within clpP at 126.292 kb on + strand, within clpP at 126.293 kb on - strand, within clpP at 126.297 kb on - strand, within clpP at 126.332 kb on + strand, within clpP at 126.338 kb on - strand, within clpP at 126.338 kb on - strand, within clpP at 126.343 kb on + strand, within clpP at 126.344 kb on - strand, within clpP at 126.344 kb on - strand, within clpP at 126.344 kb on - strand, within clpP at 126.344 kb on - strand, within clpP at 126.344 kb on - strand, within clpP at 126.344 kb on - strand, within clpP at 126.449 kb on + strand, within clpP at 126.556 kb on + strand at 126.609 kb on - strand at 126.614 kb on + strand at 126.626 kb on - strand at 126.632 kb on + strand at 126.632 kb on + strand at 126.632 kb on + strand at 126.633 kb on - strand at 126.674 kb on + strand at 126.801 kb on + strand at 126.806 kb on - strand at 126.806 kb on - strand at 126.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 123,645 - lon_P403L HEPCGN_06935 0.70 +1.4 123,667 + lon_P403L HEPCGN_06935 0.71 +0.6 123,668 - lon_P403L HEPCGN_06935 0.71 -1.0 123,668 - lon_P403L HEPCGN_06935 0.71 -1.5 123,701 + lon_P403L HEPCGN_06935 0.72 +0.2 123,836 + lon_P403L HEPCGN_06935 0.78 -2.7 123,836 + lon_P403L HEPCGN_06935 0.78 -0.4 123,837 - lon_P403L HEPCGN_06935 0.78 +0.8 123,881 + lon_P403L HEPCGN_06935 0.80 -2.1 124,124 + -0.0 124,124 + -0.9 124,267 - -0.2 124,352 + -0.7 124,365 + -2.9 124,366 - +0.7 124,417 + +1.8 124,417 + -0.3 124,427 + +0.2 124,435 + -2.2 124,435 + -1.2 124,435 + +0.7 124,435 + -0.8 124,436 - +0.7 124,436 - -0.1 124,436 - +0.1 124,436 - -2.9 124,438 - +1.0 124,473 - -0.4 124,495 + -1.2 124,496 - +0.3 124,519 + +1.9 124,519 + -0.2 124,520 - -1.5 124,520 - +0.0 124,577 + +0.1 124,687 + clpX HEPCGN_06945 0.12 -0.9 124,792 - clpX HEPCGN_06945 0.20 -1.0 125,050 - clpX HEPCGN_06945 0.40 -1.0 125,080 - clpX HEPCGN_06945 0.42 -0.2 125,098 - clpX HEPCGN_06945 0.44 -0.8 125,098 - clpX HEPCGN_06945 0.44 -1.0 125,098 - clpX HEPCGN_06945 0.44 -0.9 125,098 - clpX HEPCGN_06945 0.44 -0.4 125,102 - clpX HEPCGN_06945 0.44 -0.8 125,164 - clpX HEPCGN_06945 0.49 -0.3 125,297 - clpX HEPCGN_06945 0.59 -0.5 125,297 - clpX HEPCGN_06945 0.59 -1.9 125,357 + clpX HEPCGN_06945 0.64 -2.9 125,475 + clpX HEPCGN_06945 0.73 -0.5 125,537 + clpX HEPCGN_06945 0.78 -0.0 125,538 - clpX HEPCGN_06945 0.78 +0.8 125,538 - clpX HEPCGN_06945 0.78 -0.4 125,586 - clpX HEPCGN_06945 0.82 -0.7 125,682 + clpX HEPCGN_06945 0.90 -1.2 125,686 + clpX HEPCGN_06945 0.90 +1.1 125,687 - -0.2 125,687 - -0.0 125,710 - -1.5 125,711 + -1.3 125,711 + +0.1 125,712 - +0.5 125,712 - +1.0 125,712 - +0.3 125,712 - -0.3 125,805 + +0.2 125,914 - +0.9 125,914 - -2.8 125,914 - +0.0 125,978 - -2.1 126,275 + clpP HEPCGN_06950 0.54 +0.1 126,292 + clpP HEPCGN_06950 0.56 -0.8 126,292 + clpP HEPCGN_06950 0.56 -0.4 126,293 - clpP HEPCGN_06950 0.57 -0.3 126,297 - clpP HEPCGN_06950 0.57 -1.2 126,332 + clpP HEPCGN_06950 0.63 -2.4 126,338 - clpP HEPCGN_06950 0.64 -1.8 126,338 - clpP HEPCGN_06950 0.64 -2.4 126,343 + clpP HEPCGN_06950 0.65 -0.4 126,344 - clpP HEPCGN_06950 0.65 +1.7 126,344 - clpP HEPCGN_06950 0.65 -0.0 126,344 - clpP HEPCGN_06950 0.65 -1.4 126,344 - clpP HEPCGN_06950 0.65 +1.0 126,344 - clpP HEPCGN_06950 0.65 -1.4 126,344 - clpP HEPCGN_06950 0.65 +0.0 126,449 + clpP HEPCGN_06950 0.82 -1.4 126,556 + -1.1 126,609 - +1.3 126,614 + -0.3 126,626 - -0.1 126,632 + -0.0 126,632 + -1.9 126,632 + -0.5 126,633 - -0.3 126,674 + -0.5 126,801 + -0.2 126,806 - -0.2 126,806 - +0.3 126,811 - -0.2
Or see this region's nucleotide sequence