Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05770

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpunR and purR overlap by 4 nucleotidespurR and ynhF are separated by 298 nucleotidesynhF and ydhP are separated by 165 nucleotides HEPCGN_05765: punR - DNA-binding transcriptional activator PunR, at 1,025,497 to 1,026,429 punR HEPCGN_05770: purR - HTH-type transcriptional repressor PurR, at 1,026,426 to 1,027,451 purR HEPCGN_05780: ynhF - stress response protein YnhF, at 1,027,750 to 1,027,839 ynhF HEPCGN_05785: ydhP - Inner membrane transport protein YdhP, at 1,028,005 to 1,029,174 ydhP Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1025.541 kb on + strandat 1025.599 kb on + strand, within punRat 1025.599 kb on + strand, within punRat 1025.600 kb on - strand, within punRat 1025.600 kb on - strand, within punRat 1025.777 kb on + strand, within punRat 1026.111 kb on - strand, within punRat 1026.120 kb on + strand, within punRat 1026.186 kb on + strand, within punRat 1026.187 kb on - strand, within punRat 1026.200 kb on + strand, within punRat 1026.201 kb on - strand, within punRat 1026.252 kb on + strand, within punRat 1026.266 kb on + strand, within punRat 1026.267 kb on - strand, within punRat 1026.801 kb on + strand, within purRat 1026.882 kb on - strand, within purRat 1026.902 kb on + strand, within purRat 1026.931 kb on - strand, within purRat 1026.937 kb on + strand, within purRat 1026.938 kb on - strand, within purRat 1026.953 kb on - strand, within purRat 1027.275 kb on - strand, within purRat 1027.600 kb on + strandat 1027.605 kb on + strandat 1027.606 kb on - strandat 1027.649 kb on - strandat 1027.658 kb on + strandat 1027.658 kb on + strandat 1027.659 kb on - strandat 1027.667 kb on - strandat 1027.698 kb on + strandat 1027.764 kb on + strand, within ynhFat 1027.779 kb on - strand, within ynhFat 1027.999 kb on + strandat 1028.149 kb on + strand, within ydhPat 1028.150 kb on - strand, within ydhPat 1028.259 kb on - strand, within ydhPat 1028.284 kb on - strand, within ydhPat 1028.380 kb on - strand, within ydhP

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,025,541 + -0.7
1,025,599 + punR HEPCGN_05765 0.11 -0.8
1,025,599 + punR HEPCGN_05765 0.11 -1.3
1,025,600 - punR HEPCGN_05765 0.11 -0.1
1,025,600 - punR HEPCGN_05765 0.11 +1.0
1,025,777 + punR HEPCGN_05765 0.30 +0.4
1,026,111 - punR HEPCGN_05765 0.66 +0.2
1,026,120 + punR HEPCGN_05765 0.67 +0.3
1,026,186 + punR HEPCGN_05765 0.74 -0.4
1,026,187 - punR HEPCGN_05765 0.74 +2.2
1,026,200 + punR HEPCGN_05765 0.75 -0.3
1,026,201 - punR HEPCGN_05765 0.75 -1.3
1,026,252 + punR HEPCGN_05765 0.81 -0.7
1,026,266 + punR HEPCGN_05765 0.82 -0.7
1,026,267 - punR HEPCGN_05765 0.83 +0.3
1,026,801 + purR HEPCGN_05770 0.37 -2.6
1,026,882 - purR HEPCGN_05770 0.44 -0.5
1,026,902 + purR HEPCGN_05770 0.46 -0.4
1,026,931 - purR HEPCGN_05770 0.49 -3.1
1,026,937 + purR HEPCGN_05770 0.50 -1.9
1,026,938 - purR HEPCGN_05770 0.50 -1.8
1,026,953 - purR HEPCGN_05770 0.51 -1.0
1,027,275 - purR HEPCGN_05770 0.83 -0.7
1,027,600 + -0.7
1,027,605 + +0.2
1,027,606 - -0.6
1,027,649 - -1.0
1,027,658 + -0.3
1,027,658 + -1.1
1,027,659 - -0.2
1,027,667 - -0.1
1,027,698 + -0.3
1,027,764 + ynhF HEPCGN_05780 0.16 +0.3
1,027,779 - ynhF HEPCGN_05780 0.32 +1.1
1,027,999 + +0.3
1,028,149 + ydhP HEPCGN_05785 0.12 -0.9
1,028,150 - ydhP HEPCGN_05785 0.12 -2.0
1,028,259 - ydhP HEPCGN_05785 0.22 +0.4
1,028,284 - ydhP HEPCGN_05785 0.24 -0.2
1,028,380 - ydhP HEPCGN_05785 0.32 +0.6

Or see this region's nucleotide sequence