Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt punR and purR overlap by 4 nucleotides purR and ynhF are separated by 298 nucleotides ynhF and ydhP are separated by 165 nucleotides
HEPCGN_05765: punR - DNA-binding transcriptional activator PunR, at 1,025,497 to 1,026,429
punR
HEPCGN_05770: purR - HTH-type transcriptional repressor PurR, at 1,026,426 to 1,027,451
purR
HEPCGN_05780: ynhF - stress response protein YnhF, at 1,027,750 to 1,027,839
ynhF
HEPCGN_05785: ydhP - Inner membrane transport protein YdhP, at 1,028,005 to 1,029,174
ydhP
Position (kb)
1026
1027
1028 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1025.541 kb on + strand at 1025.599 kb on + strand, within punR at 1025.599 kb on + strand, within punR at 1025.600 kb on - strand, within punR at 1025.600 kb on - strand, within punR at 1025.777 kb on + strand, within punR at 1026.111 kb on - strand, within punR at 1026.120 kb on + strand, within punR at 1026.186 kb on + strand, within punR at 1026.187 kb on - strand, within punR at 1026.200 kb on + strand, within punR at 1026.201 kb on - strand, within punR at 1026.252 kb on + strand, within punR at 1026.266 kb on + strand, within punR at 1026.267 kb on - strand, within punR at 1026.801 kb on + strand, within purR at 1026.882 kb on - strand, within purR at 1026.902 kb on + strand, within purR at 1026.931 kb on - strand, within purR at 1026.937 kb on + strand, within purR at 1026.938 kb on - strand, within purR at 1026.953 kb on - strand, within purR at 1027.275 kb on - strand, within purR at 1027.600 kb on + strand at 1027.605 kb on + strand at 1027.606 kb on - strand at 1027.649 kb on - strand at 1027.658 kb on + strand at 1027.658 kb on + strand at 1027.659 kb on - strand at 1027.667 kb on - strand at 1027.698 kb on + strand at 1027.764 kb on + strand, within ynhF at 1027.779 kb on - strand, within ynhF at 1027.999 kb on + strand at 1028.149 kb on + strand, within ydhP at 1028.150 kb on - strand, within ydhP at 1028.259 kb on - strand, within ydhP at 1028.284 kb on - strand, within ydhP at 1028.380 kb on - strand, within ydhP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,025,541 + -0.7 1,025,599 + punR HEPCGN_05765 0.11 -0.8 1,025,599 + punR HEPCGN_05765 0.11 -1.3 1,025,600 - punR HEPCGN_05765 0.11 -0.1 1,025,600 - punR HEPCGN_05765 0.11 +1.0 1,025,777 + punR HEPCGN_05765 0.30 +0.4 1,026,111 - punR HEPCGN_05765 0.66 +0.2 1,026,120 + punR HEPCGN_05765 0.67 +0.3 1,026,186 + punR HEPCGN_05765 0.74 -0.4 1,026,187 - punR HEPCGN_05765 0.74 +2.2 1,026,200 + punR HEPCGN_05765 0.75 -0.3 1,026,201 - punR HEPCGN_05765 0.75 -1.3 1,026,252 + punR HEPCGN_05765 0.81 -0.7 1,026,266 + punR HEPCGN_05765 0.82 -0.7 1,026,267 - punR HEPCGN_05765 0.83 +0.3 1,026,801 + purR HEPCGN_05770 0.37 -2.6 1,026,882 - purR HEPCGN_05770 0.44 -0.5 1,026,902 + purR HEPCGN_05770 0.46 -0.4 1,026,931 - purR HEPCGN_05770 0.49 -3.1 1,026,937 + purR HEPCGN_05770 0.50 -1.9 1,026,938 - purR HEPCGN_05770 0.50 -1.8 1,026,953 - purR HEPCGN_05770 0.51 -1.0 1,027,275 - purR HEPCGN_05770 0.83 -0.7 1,027,600 + -0.7 1,027,605 + +0.2 1,027,606 - -0.6 1,027,649 - -1.0 1,027,658 + -0.3 1,027,658 + -1.1 1,027,659 - -0.2 1,027,667 - -0.1 1,027,698 + -0.3 1,027,764 + ynhF HEPCGN_05780 0.16 +0.3 1,027,779 - ynhF HEPCGN_05780 0.32 +1.1 1,027,999 + +0.3 1,028,149 + ydhP HEPCGN_05785 0.12 -0.9 1,028,150 - ydhP HEPCGN_05785 0.12 -2.0 1,028,259 - ydhP HEPCGN_05785 0.22 +0.4 1,028,284 - ydhP HEPCGN_05785 0.24 -0.2 1,028,380 - ydhP HEPCGN_05785 0.32 +0.6
Or see this region's nucleotide sequence