Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pfkB and ydiY are separated by 286 nucleotides ydiY and yniD are separated by 52 nucleotides yniD and HEPCGN_05415 are separated by 166 nucleotides
HEPCGN_05400: pfkB - 6-phosphofructokinase II, at 954,026 to 954,955
pfkB
HEPCGN_05405: ydiY - Uncharacterized protein YdiY, at 955,242 to 956,000
ydiY
HEPCGN_05410: yniD - Uncharacterized protein YniD, at 956,053 to 956,160
yniD
HEPCGN_05415: HEPCGN_05415 - ShET2 enterotoxin, N-terminal region, at 956,327 to 958,225
_05415
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.253 kb on + strand, within pfkB at 954.415 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.671 kb on + strand, within pfkB at 954.672 kb on - strand, within pfkB at 954.708 kb on - strand, within pfkB at 954.708 kb on - strand, within pfkB at 954.946 kb on + strand at 954.946 kb on + strand at 954.946 kb on + strand at 954.947 kb on - strand at 954.968 kb on + strand at 954.969 kb on - strand at 955.020 kb on + strand at 955.027 kb on + strand at 955.056 kb on + strand at 955.057 kb on - strand at 955.060 kb on + strand at 955.226 kb on + strand at 955.226 kb on + strand at 955.226 kb on + strand at 955.274 kb on + strand at 955.393 kb on - strand, within ydiY at 955.508 kb on + strand, within ydiY at 955.565 kb on - strand, within ydiY at 955.572 kb on + strand, within ydiY at 955.572 kb on + strand, within ydiY at 955.579 kb on - strand, within ydiY at 955.582 kb on + strand, within ydiY at 955.615 kb on - strand, within ydiY at 955.720 kb on - strand, within ydiY at 955.729 kb on - strand, within ydiY at 955.731 kb on - strand, within ydiY at 955.779 kb on + strand, within ydiY at 955.806 kb on - strand, within ydiY at 955.880 kb on + strand, within ydiY at 955.999 kb on - strand at 955.999 kb on - strand at 956.022 kb on - strand at 956.080 kb on + strand, within yniD at 956.080 kb on + strand, within yniD at 956.080 kb on + strand, within yniD at 956.091 kb on + strand, within yniD at 956.110 kb on + strand, within yniD at 956.111 kb on - strand, within yniD at 956.314 kb on + strand at 956.330 kb on + strand at 956.857 kb on - strand, within HEPCGN_05415 at 956.872 kb on - strand, within HEPCGN_05415 at 956.938 kb on + strand, within HEPCGN_05415 at 956.944 kb on + strand, within HEPCGN_05415
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 954,253 + pfkB HEPCGN_05400 0.24 +1.4 954,415 + pfkB HEPCGN_05400 0.42 +0.4 954,671 + pfkB HEPCGN_05400 0.69 +1.5 954,671 + pfkB HEPCGN_05400 0.69 +0.5 954,671 + pfkB HEPCGN_05400 0.69 -0.3 954,671 + pfkB HEPCGN_05400 0.69 +0.2 954,671 + pfkB HEPCGN_05400 0.69 +0.5 954,672 - pfkB HEPCGN_05400 0.69 +0.9 954,708 - pfkB HEPCGN_05400 0.73 +0.4 954,708 - pfkB HEPCGN_05400 0.73 +0.2 954,946 + -1.6 954,946 + -0.5 954,946 + -0.2 954,947 - +2.2 954,968 + -0.5 954,969 - +0.0 955,020 + +1.0 955,027 + +0.1 955,056 + -1.8 955,057 - -0.7 955,060 + -0.0 955,226 + -0.2 955,226 + +0.8 955,226 + -0.1 955,274 + +0.2 955,393 - ydiY HEPCGN_05405 0.20 +1.4 955,508 + ydiY HEPCGN_05405 0.35 -0.5 955,565 - ydiY HEPCGN_05405 0.43 +0.2 955,572 + ydiY HEPCGN_05405 0.43 -1.6 955,572 + ydiY HEPCGN_05405 0.43 -0.8 955,579 - ydiY HEPCGN_05405 0.44 -1.8 955,582 + ydiY HEPCGN_05405 0.45 -0.2 955,615 - ydiY HEPCGN_05405 0.49 -1.3 955,720 - ydiY HEPCGN_05405 0.63 +0.4 955,729 - ydiY HEPCGN_05405 0.64 -0.2 955,731 - ydiY HEPCGN_05405 0.64 -2.3 955,779 + ydiY HEPCGN_05405 0.71 +0.2 955,806 - ydiY HEPCGN_05405 0.74 -3.1 955,880 + ydiY HEPCGN_05405 0.84 -0.3 955,999 - +0.7 955,999 - -0.6 956,022 - -0.2 956,080 + yniD HEPCGN_05410 0.25 -2.1 956,080 + yniD HEPCGN_05410 0.25 -3.1 956,080 + yniD HEPCGN_05410 0.25 +0.9 956,091 + yniD HEPCGN_05410 0.35 +1.3 956,110 + yniD HEPCGN_05410 0.53 +0.1 956,111 - yniD HEPCGN_05410 0.54 -0.5 956,314 + +1.3 956,330 + +0.7 956,857 - HEPCGN_05415 0.28 -1.5 956,872 - HEPCGN_05415 0.29 -1.3 956,938 + HEPCGN_05415 0.32 +0.7 956,944 + HEPCGN_05415 0.32 +2.2
Or see this region's nucleotide sequence