Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt marR and HEPCGN_04390 overlap by 4 nucleotides HEPCGN_04390 and HEPCGN_04395 are separated by 23 nucleotides HEPCGN_04395 and HEPCGN_04400 are separated by 92 nucleotides HEPCGN_04400 and HEPCGN_04405 overlap by 4 nucleotides HEPCGN_04405 and HEPCGN_04410 are separated by 11 nucleotides HEPCGN_04410 and HEPCGN_04415 are separated by 10 nucleotides HEPCGN_04415 and HEPCGN_04420 are separated by 21 nucleotides HEPCGN_04420 and HEPCGN_04425 are separated by 71 nucleotides
HEPCGN_04385: marR - MarR family transcriptional regulator, at 768,995 to 769,261
marR
HEPCGN_04390: HEPCGN_04390 - hypothetical protein, at 769,258 to 769,461
_04390
HEPCGN_04395: HEPCGN_04395 - Phage protein, at 769,485 to 769,901
_04395
HEPCGN_04400: HEPCGN_04400 - Membrane protein, at 769,994 to 770,107
_04400
HEPCGN_04405: HEPCGN_04405 - DUF4754 domain-containing protein, at 770,104 to 770,346
_04405
HEPCGN_04410: HEPCGN_04410 - hypothetical protein, at 770,358 to 770,636
_04410
HEPCGN_04415: HEPCGN_04415 - DUF4761 domain-containing protein, at 770,647 to 770,997
_04415
HEPCGN_04420: HEPCGN_04420 - DNA-binding protein, at 771,019 to 771,222
_04420
HEPCGN_04425: HEPCGN_04425 - hypothetical protein, at 771,294 to 771,431
_04425
Position (kb) 770
771 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 769.177 kb on + strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.178 kb on - strand, within marR at 769.222 kb on + strand, within marR at 769.245 kb on + strand at 769.246 kb on - strand at 769.277 kb on - strand at 769.322 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.340 kb on + strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.341 kb on - strand, within HEPCGN_04390 at 769.487 kb on - strand at 769.487 kb on - strand at 769.524 kb on + strand at 769.600 kb on + strand, within HEPCGN_04395 at 769.715 kb on + strand, within HEPCGN_04395 at 769.904 kb on + strand at 769.905 kb on - strand at 769.970 kb on + strand at 770.219 kb on + strand, within HEPCGN_04405 at 770.360 kb on - strand at 770.518 kb on + strand, within HEPCGN_04410 at 770.518 kb on + strand, within HEPCGN_04410 at 770.575 kb on - strand, within HEPCGN_04410 at 770.575 kb on - strand, within HEPCGN_04410 at 770.648 kb on + strand at 770.648 kb on + strand at 770.907 kb on + strand, within HEPCGN_04415 at 770.907 kb on + strand, within HEPCGN_04415 at 770.908 kb on - strand, within HEPCGN_04415 at 770.910 kb on + strand, within HEPCGN_04415 at 770.910 kb on + strand, within HEPCGN_04415 at 770.950 kb on + strand, within HEPCGN_04415 at 770.979 kb on + strand at 771.147 kb on + strand, within HEPCGN_04420 at 771.148 kb on - strand, within HEPCGN_04420 at 771.178 kb on + strand, within HEPCGN_04420 at 771.182 kb on + strand, within HEPCGN_04420 at 771.183 kb on - strand, within HEPCGN_04420 at 771.183 kb on - strand, within HEPCGN_04420 at 771.201 kb on + strand, within HEPCGN_04420 at 771.211 kb on + strand at 771.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 769,177 + marR HEPCGN_04385 0.68 +1.0 769,178 - marR HEPCGN_04385 0.69 -1.1 769,178 - marR HEPCGN_04385 0.69 +0.6 769,178 - marR HEPCGN_04385 0.69 +3.2 769,178 - marR HEPCGN_04385 0.69 +0.3 769,222 + marR HEPCGN_04385 0.85 +0.3 769,245 + -1.2 769,246 - -0.3 769,277 - -1.2 769,322 + HEPCGN_04390 0.31 -2.1 769,340 + HEPCGN_04390 0.40 -0.4 769,340 + HEPCGN_04390 0.40 +0.4 769,340 + HEPCGN_04390 0.40 +0.0 769,341 - HEPCGN_04390 0.41 +1.5 769,341 - HEPCGN_04390 0.41 +0.1 769,341 - HEPCGN_04390 0.41 -0.1 769,487 - -1.2 769,487 - -0.7 769,524 + +0.0 769,600 + HEPCGN_04395 0.28 +0.0 769,715 + HEPCGN_04395 0.55 +2.0 769,904 + -0.5 769,905 - +1.5 769,970 + +0.7 770,219 + HEPCGN_04405 0.47 -0.8 770,360 - -1.6 770,518 + HEPCGN_04410 0.57 +0.6 770,518 + HEPCGN_04410 0.57 +0.7 770,575 - HEPCGN_04410 0.78 +0.7 770,575 - HEPCGN_04410 0.78 -0.4 770,648 + +1.5 770,648 + -1.5 770,907 + HEPCGN_04415 0.74 -0.0 770,907 + HEPCGN_04415 0.74 +0.0 770,908 - HEPCGN_04415 0.74 +1.2 770,910 + HEPCGN_04415 0.75 -0.1 770,910 + HEPCGN_04415 0.75 -1.3 770,950 + HEPCGN_04415 0.86 -0.6 770,979 + -0.0 771,147 + HEPCGN_04420 0.63 +0.5 771,148 - HEPCGN_04420 0.63 +0.8 771,178 + HEPCGN_04420 0.78 -1.4 771,182 + HEPCGN_04420 0.80 -0.4 771,183 - HEPCGN_04420 0.80 -0.6 771,183 - HEPCGN_04420 0.80 +0.3 771,201 + HEPCGN_04420 0.89 -0.2 771,211 + -0.7 771,213 + -0.1
Or see this region's nucleotide sequence