Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02010

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdfA and ybjH are separated by 40 nucleotidesybjH and ybjI are separated by 90 nucleotidesybjI and ybjJ overlap by 1 nucleotides HEPCGN_02005: mdfA - multidrug efflux MFS transporter MdfA, at 328,261 to 329,493 mdfA HEPCGN_02010: ybjH - Uncharacterized protein YbjH, at 329,534 to 329,812 ybjH HEPCGN_02015: ybjI - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, at 329,903 to 330,718 ybjI HEPCGN_02020: ybjJ - Inner membrane protein YbjJ, at 330,718 to 331,926 ybjJ Position (kb) 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1at 328.560 kb on - strand, within mdfAat 328.610 kb on + strand, within mdfAat 328.610 kb on + strand, within mdfAat 328.610 kb on + strand, within mdfAat 328.610 kb on + strand, within mdfAat 328.611 kb on - strand, within mdfAat 328.611 kb on - strand, within mdfAat 328.724 kb on + strand, within mdfAat 328.894 kb on + strand, within mdfAat 328.894 kb on + strand, within mdfAat 328.897 kb on - strand, within mdfAat 328.897 kb on - strand, within mdfAat 328.897 kb on - strand, within mdfAat 328.992 kb on + strand, within mdfAat 328.998 kb on + strand, within mdfAat 328.999 kb on - strand, within mdfAat 329.063 kb on + strand, within mdfAat 329.182 kb on - strand, within mdfAat 329.198 kb on - strand, within mdfAat 329.198 kb on - strand, within mdfAat 329.201 kb on + strand, within mdfAat 329.228 kb on - strand, within mdfAat 329.344 kb on - strand, within mdfAat 329.401 kb on - strandat 329.463 kb on + strandat 329.464 kb on - strandat 329.582 kb on + strand, within ybjHat 329.876 kb on + strandat 329.911 kb on + strandat 329.911 kb on + strandat 329.911 kb on + strandat 330.146 kb on - strand, within ybjIat 330.150 kb on - strand, within ybjIat 330.286 kb on + strand, within ybjIat 330.293 kb on + strand, within ybjIat 330.293 kb on + strand, within ybjIat 330.294 kb on - strand, within ybjIat 330.315 kb on + strand, within ybjIat 330.379 kb on + strand, within ybjIat 330.382 kb on - strand, within ybjIat 330.448 kb on + strand, within ybjIat 330.448 kb on + strand, within ybjIat 330.675 kb on - strandat 330.682 kb on + strandat 330.705 kb on - strandat 330.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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328,560 - mdfA HEPCGN_02005 0.24 -0.1
328,610 + mdfA HEPCGN_02005 0.28 -0.3
328,610 + mdfA HEPCGN_02005 0.28 -0.3
328,610 + mdfA HEPCGN_02005 0.28 -0.3
328,610 + mdfA HEPCGN_02005 0.28 -0.7
328,611 - mdfA HEPCGN_02005 0.28 -0.1
328,611 - mdfA HEPCGN_02005 0.28 -0.3
328,724 + mdfA HEPCGN_02005 0.38 +0.3
328,894 + mdfA HEPCGN_02005 0.51 +0.0
328,894 + mdfA HEPCGN_02005 0.51 +0.2
328,897 - mdfA HEPCGN_02005 0.52 +0.5
328,897 - mdfA HEPCGN_02005 0.52 -0.6
328,897 - mdfA HEPCGN_02005 0.52 +0.8
328,992 + mdfA HEPCGN_02005 0.59 -0.6
328,998 + mdfA HEPCGN_02005 0.60 -0.5
328,999 - mdfA HEPCGN_02005 0.60 -1.0
329,063 + mdfA HEPCGN_02005 0.65 +1.0
329,182 - mdfA HEPCGN_02005 0.75 -0.3
329,198 - mdfA HEPCGN_02005 0.76 -0.3
329,198 - mdfA HEPCGN_02005 0.76 -1.3
329,201 + mdfA HEPCGN_02005 0.76 -0.3
329,228 - mdfA HEPCGN_02005 0.78 +0.7
329,344 - mdfA HEPCGN_02005 0.88 -0.0
329,401 - -0.3
329,463 + -0.7
329,464 - -0.3
329,582 + ybjH HEPCGN_02010 0.17 -1.5
329,876 + -0.1
329,911 + +0.6
329,911 + -0.6
329,911 + -0.5
330,146 - ybjI HEPCGN_02015 0.30 -3.1
330,150 - ybjI HEPCGN_02015 0.30 -0.6
330,286 + ybjI HEPCGN_02015 0.47 +0.1
330,293 + ybjI HEPCGN_02015 0.48 -1.2
330,293 + ybjI HEPCGN_02015 0.48 -0.3
330,294 - ybjI HEPCGN_02015 0.48 +1.0
330,315 + ybjI HEPCGN_02015 0.50 -0.4
330,379 + ybjI HEPCGN_02015 0.58 -0.5
330,382 - ybjI HEPCGN_02015 0.59 -0.8
330,448 + ybjI HEPCGN_02015 0.67 +0.6
330,448 + ybjI HEPCGN_02015 0.67 +1.3
330,675 - +0.0
330,682 + -0.7
330,705 - +0.6
330,705 - +0.5

Or see this region's nucleotide sequence