Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00240 and HEPCGN_00245 are separated by 51 nucleotides HEPCGN_00245 and HEPCGN_00250 overlap by 4 nucleotides HEPCGN_00250 and HEPCGN_00255 are separated by 82 nucleotides HEPCGN_00255 and HEPCGN_00260 are separated by 576 nucleotides
HEPCGN_00240: HEPCGN_00240 - hypothetical protein, at 15,731 to 16,030
_00240
HEPCGN_00245: HEPCGN_00245 - Phage tail protein, at 16,082 to 16,456
_00245
HEPCGN_00250: HEPCGN_00250 - hypothetical protein, at 16,453 to 16,764
_00250
HEPCGN_00255: HEPCGN_00255 - hypothetical protein, at 16,847 to 16,984
_00255
HEPCGN_00260: HEPCGN_00260 - TaxA, at 17,561 to 18,064
_00260
Position (kb)
16
17 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 16.136 kb on - strand, within HEPCGN_00245 at 16.529 kb on + strand, within HEPCGN_00250 at 16.730 kb on + strand, within HEPCGN_00250 at 16.970 kb on + strand, within HEPCGN_00255 at 17.179 kb on + strand at 17.198 kb on + strand at 17.199 kb on - strand at 17.300 kb on - strand at 17.353 kb on + strand at 17.408 kb on + strand at 17.408 kb on + strand at 17.409 kb on - strand at 17.409 kb on - strand at 17.409 kb on - strand at 17.425 kb on - strand at 17.442 kb on + strand at 17.443 kb on - strand at 17.443 kb on - strand at 17.446 kb on + strand at 17.446 kb on + strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.447 kb on - strand at 17.813 kb on - strand, within HEPCGN_00260
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 16,136 - HEPCGN_00245 0.14 -0.8 16,529 + HEPCGN_00250 0.24 -0.1 16,730 + HEPCGN_00250 0.89 -0.1 16,970 + HEPCGN_00255 0.89 -3.1 17,179 + -0.1 17,198 + +1.9 17,199 - -0.1 17,300 - +0.3 17,353 + -0.5 17,408 + +0.7 17,408 + -0.7 17,409 - -0.1 17,409 - -0.4 17,409 - +0.2 17,425 - +0.4 17,442 + -0.1 17,443 - -0.4 17,443 - +4.3 17,446 + +0.6 17,446 + -0.5 17,447 - -1.1 17,447 - -0.3 17,447 - -0.6 17,813 - HEPCGN_00260 0.50 -0.1
Or see this region's nucleotide sequence