Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00245

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00235 and HEPCGN_00240 are separated by 453 nucleotidesHEPCGN_00240 and HEPCGN_00245 are separated by 51 nucleotidesHEPCGN_00245 and HEPCGN_00250 overlap by 4 nucleotidesHEPCGN_00250 and HEPCGN_00255 are separated by 82 nucleotides HEPCGN_00235: HEPCGN_00235 - XRE family transcriptional regulator, at 15,050 to 15,277 _00235 HEPCGN_00240: HEPCGN_00240 - hypothetical protein, at 15,731 to 16,030 _00240 HEPCGN_00245: HEPCGN_00245 - Phage tail protein, at 16,082 to 16,456 _00245 HEPCGN_00250: HEPCGN_00250 - hypothetical protein, at 16,453 to 16,764 _00250 HEPCGN_00255: HEPCGN_00255 - hypothetical protein, at 16,847 to 16,984 _00255 Position (kb) 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 15.296 kb on + strandat 15.296 kb on + strandat 15.297 kb on - strandat 15.297 kb on - strandat 15.297 kb on - strandat 15.301 kb on + strandat 15.301 kb on + strandat 15.302 kb on - strandat 15.323 kb on - strandat 15.705 kb on + strandat 15.705 kb on + strandat 15.806 kb on - strand, within HEPCGN_00240at 15.837 kb on - strand, within HEPCGN_00240at 15.837 kb on - strand, within HEPCGN_00240at 15.837 kb on - strand, within HEPCGN_00240at 16.136 kb on - strand, within HEPCGN_00245at 16.529 kb on + strand, within HEPCGN_00250at 16.730 kb on + strand, within HEPCGN_00250at 16.970 kb on + strand, within HEPCGN_00255at 17.179 kb on + strandat 17.198 kb on + strandat 17.199 kb on - strandat 17.300 kb on - strandat 17.353 kb on + strandat 17.408 kb on + strandat 17.408 kb on + strandat 17.409 kb on - strandat 17.409 kb on - strandat 17.409 kb on - strandat 17.425 kb on - strandat 17.442 kb on + strandat 17.443 kb on - strandat 17.443 kb on - strandat 17.446 kb on + strandat 17.446 kb on + strandat 17.447 kb on - strandat 17.447 kb on - strandat 17.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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15,296 + -0.2
15,296 + +0.3
15,297 - -0.2
15,297 - -0.5
15,297 - -0.7
15,301 + -0.1
15,301 + +0.5
15,302 - -0.4
15,323 - -0.3
15,705 + -0.1
15,705 + +1.1
15,806 - HEPCGN_00240 0.25 -0.7
15,837 - HEPCGN_00240 0.35 -0.3
15,837 - HEPCGN_00240 0.35 +0.0
15,837 - HEPCGN_00240 0.35 -0.5
16,136 - HEPCGN_00245 0.14 -0.8
16,529 + HEPCGN_00250 0.24 -0.1
16,730 + HEPCGN_00250 0.89 -0.1
16,970 + HEPCGN_00255 0.89 -3.1
17,179 + -0.1
17,198 + +1.9
17,199 - -0.1
17,300 - +0.3
17,353 + -0.5
17,408 + +0.7
17,408 + -0.7
17,409 - -0.1
17,409 - -0.4
17,409 - +0.2
17,425 - +0.4
17,442 + -0.1
17,443 - -0.4
17,443 - +4.3
17,446 + +0.6
17,446 + -0.5
17,447 - -1.1
17,447 - -0.3
17,447 - -0.6

Or see this region's nucleotide sequence