Strain Fitness in Escherichia coli ECOR38 around HEPCGN_27110

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and HEPCGN_27110 are separated by 93 nucleotidesHEPCGN_27110 and HEPCGN_27115 overlap by 29 nucleotidesHEPCGN_27115 and HEPCGN_27120 overlap by 4 nucleotidesHEPCGN_27120 and tnp-IS629 are separated by 101 nucleotidestnp-IS629 and tnp-IS629 overlap by 1 nucleotides HEPCGN_27100: tnp-IS3 - IS3 family transposase, at 2,661 to 2,972 tnp-IS3 HEPCGN_27110: HEPCGN_27110 - hypothetical protein, at 3,066 to 3,308 _27110 HEPCGN_27115: HEPCGN_27115 - hypothetical protein, at 3,280 to 3,486 _27115 HEPCGN_27120: HEPCGN_27120 - YdfA, at 3,483 to 3,743 _27120 HEPCGN_27125: tnp-IS629 - IS3 family IS629 transposase, at 3,845 to 4,171 tnp-IS629 HEPCGN_27130: tnp-IS629 - IS3 family IS629 transposase, at 4,171 to 5,058 tnp-IS629 Position (kb) 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1at 3.041 kb on + strandat 3.067 kb on + strandat 3.067 kb on + strandat 3.067 kb on + strandat 3.087 kb on + strandat 3.087 kb on + strandat 3.087 kb on + strandat 3.088 kb on - strandat 3.094 kb on - strand, within HEPCGN_27110at 3.168 kb on + strand, within HEPCGN_27110at 3.186 kb on - strand, within HEPCGN_27110at 3.251 kb on - strand, within HEPCGN_27110at 3.251 kb on - strand, within HEPCGN_27110at 3.385 kb on + strand, within HEPCGN_27115at 3.386 kb on - strand, within HEPCGN_27115at 3.559 kb on - strand, within HEPCGN_27120at 3.575 kb on + strand, within HEPCGN_27120at 3.575 kb on + strand, within HEPCGN_27120at 3.575 kb on + strand, within HEPCGN_27120at 3.575 kb on + strand, within HEPCGN_27120at 3.576 kb on - strand, within HEPCGN_27120at 3.576 kb on - strand, within HEPCGN_27120at 3.576 kb on - strand, within HEPCGN_27120at 3.577 kb on + strand, within HEPCGN_27120at 3.585 kb on + strand, within HEPCGN_27120at 3.585 kb on + strand, within HEPCGN_27120at 3.586 kb on - strand, within HEPCGN_27120at 3.586 kb on - strand, within HEPCGN_27120at 3.643 kb on + strand, within HEPCGN_27120at 3.643 kb on + strand, within HEPCGN_27120at 3.644 kb on - strand, within HEPCGN_27120at 3.648 kb on + strand, within HEPCGN_27120at 3.713 kb on - strand, within HEPCGN_27120at 3.748 kb on + strandat 3.748 kb on + strandat 3.749 kb on - strandat 3.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,041 + -0.4
3,067 + +0.2
3,067 + +0.7
3,067 + -0.1
3,087 + -1.7
3,087 + -0.1
3,087 + -0.1
3,088 - -0.5
3,094 - HEPCGN_27110 0.12 -0.4
3,168 + HEPCGN_27110 0.42 -0.8
3,186 - HEPCGN_27110 0.49 -0.7
3,251 - HEPCGN_27110 0.76 -3.3
3,251 - HEPCGN_27110 0.76 -0.6
3,385 + HEPCGN_27115 0.51 -0.3
3,386 - HEPCGN_27115 0.51 +0.3
3,559 - HEPCGN_27120 0.29 -0.6
3,575 + HEPCGN_27120 0.35 +0.1
3,575 + HEPCGN_27120 0.35 +0.2
3,575 + HEPCGN_27120 0.35 -2.5
3,575 + HEPCGN_27120 0.35 -0.7
3,576 - HEPCGN_27120 0.36 +0.1
3,576 - HEPCGN_27120 0.36 -0.1
3,576 - HEPCGN_27120 0.36 -2.0
3,577 + HEPCGN_27120 0.36 +0.8
3,585 + HEPCGN_27120 0.39 -0.1
3,585 + HEPCGN_27120 0.39 -1.1
3,586 - HEPCGN_27120 0.39 +0.0
3,586 - HEPCGN_27120 0.39 -0.3
3,643 + HEPCGN_27120 0.61 +0.2
3,643 + HEPCGN_27120 0.61 -1.0
3,644 - HEPCGN_27120 0.62 +0.1
3,648 + HEPCGN_27120 0.63 -0.4
3,713 - HEPCGN_27120 0.88 -0.6
3,748 + +0.6
3,748 + +0.2
3,749 - -0.2
3,763 - +0.2

Or see this region's nucleotide sequence