Strain Fitness in Escherichia coli ECOR38 around HEPCGN_27055

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjdB and HEPCGN_27045 are separated by 7 nucleotidesHEPCGN_27045 and HEPCGN_27050 overlap by 4 nucleotidesHEPCGN_27050 and fII are separated by 11 nucleotidesfII and tnp-IS3 are separated by 174 nucleotides HEPCGN_27040: yjdB - phage tail protein, at 4,152,903 to 4,153,643 yjdB HEPCGN_27045: HEPCGN_27045 - phage tail protein, at 4,153,651 to 4,154,046 _27045 HEPCGN_27050: HEPCGN_27050 - Tail completion protein Z, at 4,154,043 to 4,154,621 _27050 HEPCGN_27055: fII - Head-tail connector protein FII, at 4,154,633 to 4,154,986 fII HEPCGN_27065: tnp-IS3 - IS3 family transposase, at 4,155,161 to 4,155,472 tnp-IS3 Position (kb) 4154 4155Strain fitness (log2 ratio) -1 0 1at 4154.922 kb on + strand, within fII

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,154,922 + fII HEPCGN_27055 0.82 -0.7

Or see this region's nucleotide sequence