Strain Fitness in Escherichia coli ECOR38 around HEPCGN_26960

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydfK and HEPCGN_26960 are separated by 316 nucleotidesHEPCGN_26960 and tnp-IS629 are separated by 39 nucleotidestnp-IS629 and tnp-IS629 overlap by 1 nucleotides HEPCGN_26955: ydfK - cold shock protein YdfK, at 4,136,502 to 4,136,735 ydfK HEPCGN_26960: HEPCGN_26960 - Putative DNA-invertase, at 4,137,052 to 4,137,414 _26960 HEPCGN_26965: tnp-IS629 - IS3 family IS629 transposase, at 4,137,454 to 4,138,341 tnp-IS629 HEPCGN_26970: tnp-IS629 - IS3 family IS629 transposase, at 4,138,341 to 4,138,667 tnp-IS629 Position (kb) 4137 4138Strain fitness (log2 ratio) -1 0 1 2 3 4at 4136.054 kb on + strandat 4136.056 kb on + strandat 4136.057 kb on - strandat 4136.057 kb on - strandat 4136.106 kb on - strandat 4136.151 kb on - strandat 4136.431 kb on + strandat 4136.497 kb on + strandat 4137.017 kb on - strandat 4137.040 kb on + strandat 4137.327 kb on + strand, within HEPCGN_26960at 4137.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,136,054 + -1.1
4,136,056 + +0.8
4,136,057 - -1.2
4,136,057 - -1.0
4,136,106 - -0.3
4,136,151 - -1.2
4,136,431 + +4.7
4,136,497 + -0.5
4,137,017 - +0.1
4,137,040 + +0.7
4,137,327 + HEPCGN_26960 0.76 -0.5
4,137,399 - -0.7

Or see this region's nucleotide sequence