Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mepS and lpxT are separated by 411 nucleotides lpxT and yeiR are separated by 38 nucleotides
HEPCGN_22665: mepS - bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase, at 3,305,974 to 3,306,540
mepS
HEPCGN_22670: lpxT - Kdo(2)-lipid A phosphotransferase, at 3,306,952 to 3,307,665
lpxT
HEPCGN_22675: yeiR - zinc-binding GTPase YeiR, at 3,307,704 to 3,308,690
yeiR
Position (kb) 3306
3307
3308 Strain fitness (log2 ratio) -1
0
1 at 3306.046 kb on - strand, within mepS at 3306.140 kb on - strand, within mepS at 3306.302 kb on - strand, within mepS at 3306.320 kb on + strand, within mepS at 3306.320 kb on + strand, within mepS at 3306.321 kb on - strand, within mepS at 3306.460 kb on - strand, within mepS at 3306.510 kb on + strand at 3306.511 kb on - strand at 3306.511 kb on - strand at 3306.511 kb on - strand at 3306.576 kb on + strand at 3306.610 kb on + strand at 3306.614 kb on + strand at 3306.672 kb on + strand at 3306.816 kb on - strand at 3306.850 kb on - strand at 3306.877 kb on - strand at 3306.939 kb on + strand at 3306.940 kb on - strand at 3306.944 kb on - strand at 3307.022 kb on - strand at 3307.352 kb on - strand, within lpxT at 3307.354 kb on + strand, within lpxT at 3307.367 kb on - strand, within lpxT at 3307.367 kb on - strand, within lpxT at 3307.369 kb on + strand, within lpxT at 3307.386 kb on + strand, within lpxT at 3307.396 kb on - strand, within lpxT at 3307.447 kb on - strand, within lpxT at 3307.598 kb on + strand at 3307.599 kb on - strand at 3307.599 kb on - strand at 3307.643 kb on - strand at 3307.665 kb on + strand at 3307.666 kb on - strand at 3307.675 kb on - strand at 3307.871 kb on + strand, within yeiR at 3308.098 kb on - strand, within yeiR at 3308.246 kb on + strand, within yeiR at 3308.349 kb on + strand, within yeiR at 3308.349 kb on + strand, within yeiR at 3308.376 kb on + strand, within yeiR at 3308.455 kb on - strand, within yeiR at 3308.501 kb on + strand, within yeiR at 3308.501 kb on + strand, within yeiR at 3308.502 kb on - strand, within yeiR at 3308.622 kb on + strand at 3308.622 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,306,046 - mepS HEPCGN_22665 0.13 +0.1 3,306,140 - mepS HEPCGN_22665 0.29 +0.2 3,306,302 - mepS HEPCGN_22665 0.58 -0.2 3,306,320 + mepS HEPCGN_22665 0.61 -0.7 3,306,320 + mepS HEPCGN_22665 0.61 +0.2 3,306,321 - mepS HEPCGN_22665 0.61 +0.6 3,306,460 - mepS HEPCGN_22665 0.86 +0.7 3,306,510 + +0.0 3,306,511 - -0.5 3,306,511 - +0.1 3,306,511 - +0.4 3,306,576 + -0.9 3,306,610 + -1.2 3,306,614 + -0.1 3,306,672 + +0.0 3,306,816 - +1.5 3,306,850 - +0.6 3,306,877 - +1.5 3,306,939 + +0.7 3,306,940 - -0.3 3,306,944 - +0.3 3,307,022 - -0.9 3,307,352 - lpxT HEPCGN_22670 0.56 -0.2 3,307,354 + lpxT HEPCGN_22670 0.56 -1.1 3,307,367 - lpxT HEPCGN_22670 0.58 -0.1 3,307,367 - lpxT HEPCGN_22670 0.58 -1.2 3,307,369 + lpxT HEPCGN_22670 0.58 -1.3 3,307,386 + lpxT HEPCGN_22670 0.61 -0.9 3,307,396 - lpxT HEPCGN_22670 0.62 -0.1 3,307,447 - lpxT HEPCGN_22670 0.69 -0.0 3,307,598 + +0.2 3,307,599 - -0.2 3,307,599 - -0.5 3,307,643 - +1.0 3,307,665 + +0.3 3,307,666 - -0.5 3,307,675 - -1.3 3,307,871 + yeiR HEPCGN_22675 0.17 +1.3 3,308,098 - yeiR HEPCGN_22675 0.40 +0.1 3,308,246 + yeiR HEPCGN_22675 0.55 +0.3 3,308,349 + yeiR HEPCGN_22675 0.65 -0.5 3,308,349 + yeiR HEPCGN_22675 0.65 +0.5 3,308,376 + yeiR HEPCGN_22675 0.68 -0.2 3,308,455 - yeiR HEPCGN_22675 0.76 -0.8 3,308,501 + yeiR HEPCGN_22675 0.81 +0.2 3,308,501 + yeiR HEPCGN_22675 0.81 +1.2 3,308,502 - yeiR HEPCGN_22675 0.81 +0.4 3,308,622 + -1.2 3,308,622 + -1.5
Or see this region's nucleotide sequence