Strain Fitness in Escherichia coli ECOR38 around HEPCGN_21670

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdsdC and ipuB are separated by 394 nucleotidesipuB and ipuA are separated by 748 nucleotides HEPCGN_21665: dsdC - DNA-binding transcriptional regulator DsdC, at 3,086,041 to 3,086,988 dsdC HEPCGN_21670: ipuB - tyrosine-type DNA invertase IpuB, at 3,087,383 to 3,087,952 ipuB HEPCGN_21675: ipuA - tyrosine-type DNA invertase IpuA, at 3,088,701 to 3,089,330 ipuA Position (kb) 3087 3088Strain fitness (log2 ratio) -2 -1 0 1 2at 3086.635 kb on - strand, within dsdCat 3087.038 kb on + strandat 3087.039 kb on - strandat 3087.454 kb on - strand, within ipuBat 3087.968 kb on - strandat 3088.057 kb on + strandat 3088.065 kb on + strandat 3088.117 kb on - strandat 3088.149 kb on - strandat 3088.218 kb on - strandat 3088.622 kb on + strandat 3088.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,086,635 - dsdC HEPCGN_21665 0.63 +1.8
3,087,038 + +2.4
3,087,039 - +0.7
3,087,454 - ipuB HEPCGN_21670 0.12 -1.0
3,087,968 - +0.2
3,088,057 + -2.2
3,088,065 + +0.2
3,088,117 - -0.4
3,088,149 - +0.3
3,088,218 - +0.6
3,088,622 + -0.3
3,088,623 - -0.3

Or see this region's nucleotide sequence