Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_10605 and ecnA are separated by 110 nucleotides ecnA and HEPCGN_10615 are separated by 51 nucleotides HEPCGN_10615 and epmB are separated by 41 nucleotides epmB and HEPCGN_10625 are separated by 234 nucleotides
HEPCGN_10605: HEPCGN_10605 - Entericidin B, at 862,805 to 862,951
_10605
HEPCGN_10610: ecnA - lipoprotein antitoxin entericidin A, at 863,062 to 863,187
ecnA
HEPCGN_10615: HEPCGN_10615 - Elongation factor P, at 863,239 to 863,805
_10615
HEPCGN_10620: epmB - EF-P beta-lysylation protein EpmB, at 863,847 to 864,875
epmB
HEPCGN_10625: HEPCGN_10625 - hypothetical protein, at 865,110 to 865,979
_10625
Position (kb) 863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 862.895 kb on + strand, within HEPCGN_10605 at 862.895 kb on + strand, within HEPCGN_10605 at 862.896 kb on - strand, within HEPCGN_10605 at 862.896 kb on - strand, within HEPCGN_10605 at 862.970 kb on - strand at 862.980 kb on - strand at 862.991 kb on + strand at 863.002 kb on + strand at 863.005 kb on + strand at 863.006 kb on - strand at 863.101 kb on - strand, within ecnA at 863.200 kb on + strand at 863.201 kb on - strand at 863.240 kb on + strand at 863.241 kb on - strand at 863.258 kb on + strand at 863.259 kb on - strand at 863.580 kb on - strand, within HEPCGN_10615 at 863.586 kb on - strand, within HEPCGN_10615 at 863.586 kb on - strand, within HEPCGN_10615 at 863.792 kb on + strand at 863.793 kb on - strand at 863.796 kb on - strand at 863.796 kb on - strand at 863.832 kb on + strand at 863.836 kb on + strand at 863.836 kb on + strand at 863.837 kb on - strand at 863.855 kb on + strand at 863.856 kb on - strand at 863.866 kb on + strand at 863.866 kb on + strand at 863.866 kb on + strand at 863.867 kb on - strand at 863.870 kb on + strand at 863.949 kb on - strand at 863.950 kb on + strand, within epmB at 864.023 kb on + strand, within epmB at 864.077 kb on + strand, within epmB at 864.077 kb on + strand, within epmB at 864.145 kb on + strand, within epmB at 864.145 kb on + strand, within epmB at 864.164 kb on + strand, within epmB at 864.164 kb on + strand, within epmB at 864.165 kb on - strand, within epmB at 864.222 kb on + strand, within epmB at 864.222 kb on + strand, within epmB at 864.246 kb on + strand, within epmB at 864.272 kb on + strand, within epmB at 864.294 kb on + strand, within epmB at 864.294 kb on + strand, within epmB at 864.294 kb on + strand, within epmB at 864.295 kb on - strand, within epmB at 864.494 kb on + strand, within epmB at 864.542 kb on - strand, within epmB at 864.583 kb on + strand, within epmB at 864.659 kb on + strand, within epmB at 864.693 kb on + strand, within epmB at 864.694 kb on - strand, within epmB at 864.716 kb on - strand, within epmB at 864.716 kb on - strand, within epmB at 864.873 kb on + strand at 864.896 kb on - strand at 864.924 kb on + strand at 864.933 kb on - strand at 865.465 kb on + strand, within HEPCGN_10625 at 865.577 kb on + strand, within HEPCGN_10625 at 865.608 kb on + strand, within HEPCGN_10625 at 865.692 kb on + strand, within HEPCGN_10625 at 865.863 kb on + strand, within HEPCGN_10625 at 865.863 kb on + strand, within HEPCGN_10625 at 865.864 kb on - strand, within HEPCGN_10625
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 862,895 + HEPCGN_10605 0.61 -0.8 862,895 + HEPCGN_10605 0.61 +1.4 862,896 - HEPCGN_10605 0.62 -0.0 862,896 - HEPCGN_10605 0.62 +0.2 862,970 - +0.2 862,980 - -0.2 862,991 + -0.5 863,002 + -2.6 863,005 + -0.5 863,006 - -0.5 863,101 - ecnA HEPCGN_10610 0.31 +0.2 863,200 + -0.5 863,201 - -0.2 863,240 + +1.2 863,241 - -0.7 863,258 + -1.2 863,259 - +2.8 863,580 - HEPCGN_10615 0.60 -1.0 863,586 - HEPCGN_10615 0.61 -0.7 863,586 - HEPCGN_10615 0.61 -0.6 863,792 + -1.1 863,793 - -0.0 863,796 - -0.8 863,796 - +1.0 863,832 + +0.8 863,836 + +0.8 863,836 + -0.5 863,837 - +2.0 863,855 + -0.6 863,856 - -0.6 863,866 + -0.8 863,866 + +0.5 863,866 + -0.2 863,867 - -0.2 863,870 + -1.6 863,949 - -1.5 863,950 + epmB HEPCGN_10620 0.10 -0.0 864,023 + epmB HEPCGN_10620 0.17 -1.2 864,077 + epmB HEPCGN_10620 0.22 -1.5 864,077 + epmB HEPCGN_10620 0.22 -0.7 864,145 + epmB HEPCGN_10620 0.29 +0.5 864,145 + epmB HEPCGN_10620 0.29 -0.8 864,164 + epmB HEPCGN_10620 0.31 +0.1 864,164 + epmB HEPCGN_10620 0.31 -0.9 864,165 - epmB HEPCGN_10620 0.31 -0.3 864,222 + epmB HEPCGN_10620 0.36 +0.9 864,222 + epmB HEPCGN_10620 0.36 -0.7 864,246 + epmB HEPCGN_10620 0.39 -1.1 864,272 + epmB HEPCGN_10620 0.41 -2.9 864,294 + epmB HEPCGN_10620 0.43 -1.6 864,294 + epmB HEPCGN_10620 0.43 -1.6 864,294 + epmB HEPCGN_10620 0.43 -0.5 864,295 - epmB HEPCGN_10620 0.44 -1.7 864,494 + epmB HEPCGN_10620 0.63 -0.1 864,542 - epmB HEPCGN_10620 0.68 -0.3 864,583 + epmB HEPCGN_10620 0.72 -2.2 864,659 + epmB HEPCGN_10620 0.79 +1.1 864,693 + epmB HEPCGN_10620 0.82 +0.6 864,694 - epmB HEPCGN_10620 0.82 -0.2 864,716 - epmB HEPCGN_10620 0.84 -1.8 864,716 - epmB HEPCGN_10620 0.84 -0.4 864,873 + -0.5 864,896 - +0.7 864,924 + -2.4 864,933 - +0.3 865,465 + HEPCGN_10625 0.41 +0.5 865,577 + HEPCGN_10625 0.54 -0.2 865,608 + HEPCGN_10625 0.57 +0.1 865,692 + HEPCGN_10625 0.67 +0.2 865,863 + HEPCGN_10625 0.87 +1.7 865,863 + HEPCGN_10625 0.87 +0.4 865,864 - HEPCGN_10625 0.87 +0.3
Or see this region's nucleotide sequence