Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ddlA and yaiZ are separated by 23 nucleotides yaiZ and yaiY are separated by 259 nucleotides yaiY and yaiW are separated by 57 nucleotides
HEPCGN_07275: ddlA - D-alanine--D-alanine ligase, at 188,219 to 189,313
ddlA
HEPCGN_07280: yaiZ - Uncharacterized protein YaiZ, at 189,337 to 189,549
yaiZ
HEPCGN_07285: yaiY - Inner membrane protein YaiY, at 189,809 to 190,117
yaiY
HEPCGN_07290: yaiW - surface-exposed outer membrane lipoprotein YaiW, at 190,175 to 191,269
yaiW
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.812 kb on - strand, within ddlA at 188.961 kb on + strand, within ddlA at 188.961 kb on + strand, within ddlA at 188.996 kb on + strand, within ddlA at 188.997 kb on - strand, within ddlA at 189.058 kb on + strand, within ddlA at 189.196 kb on + strand, within ddlA at 189.196 kb on + strand, within ddlA at 189.197 kb on - strand, within ddlA at 189.197 kb on - strand, within ddlA at 189.233 kb on + strand at 189.311 kb on + strand at 189.311 kb on + strand at 189.311 kb on + strand at 189.311 kb on + strand at 189.339 kb on - strand at 189.339 kb on - strand at 189.400 kb on - strand, within yaiZ at 189.428 kb on + strand, within yaiZ at 189.429 kb on - strand, within yaiZ at 189.487 kb on + strand, within yaiZ at 189.487 kb on + strand, within yaiZ at 189.487 kb on + strand, within yaiZ at 189.488 kb on - strand, within yaiZ at 189.488 kb on - strand, within yaiZ at 189.489 kb on + strand, within yaiZ at 189.490 kb on - strand, within yaiZ at 189.490 kb on - strand, within yaiZ at 189.510 kb on - strand, within yaiZ at 189.512 kb on + strand, within yaiZ at 189.512 kb on + strand, within yaiZ at 189.513 kb on - strand, within yaiZ at 189.513 kb on - strand, within yaiZ at 189.513 kb on - strand, within yaiZ at 189.584 kb on + strand at 189.645 kb on + strand at 189.808 kb on + strand at 189.809 kb on - strand at 189.851 kb on + strand, within yaiY at 190.017 kb on + strand, within yaiY at 190.053 kb on + strand, within yaiY at 190.123 kb on - strand at 190.150 kb on + strand at 190.151 kb on - strand at 190.186 kb on + strand at 190.187 kb on - strand at 190.586 kb on + strand, within yaiW at 190.599 kb on + strand, within yaiW at 190.626 kb on + strand, within yaiW at 190.627 kb on - strand, within yaiW at 190.630 kb on + strand, within yaiW at 190.708 kb on + strand, within yaiW at 190.708 kb on + strand, within yaiW at 190.843 kb on + strand, within yaiW at 190.976 kb on + strand, within yaiW at 191.005 kb on - strand, within yaiW
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 188,812 - ddlA HEPCGN_07275 0.54 -0.1 188,961 + ddlA HEPCGN_07275 0.68 -0.1 188,961 + ddlA HEPCGN_07275 0.68 -0.7 188,996 + ddlA HEPCGN_07275 0.71 -1.1 188,997 - ddlA HEPCGN_07275 0.71 -1.1 189,058 + ddlA HEPCGN_07275 0.77 -0.7 189,196 + ddlA HEPCGN_07275 0.89 -1.7 189,196 + ddlA HEPCGN_07275 0.89 +0.7 189,197 - ddlA HEPCGN_07275 0.89 +0.0 189,197 - ddlA HEPCGN_07275 0.89 -0.8 189,233 + +0.6 189,311 + -0.2 189,311 + -0.7 189,311 + -0.3 189,311 + +0.5 189,339 - +2.5 189,339 - -0.5 189,400 - yaiZ HEPCGN_07280 0.30 +0.0 189,428 + yaiZ HEPCGN_07280 0.43 -0.8 189,429 - yaiZ HEPCGN_07280 0.43 -1.6 189,487 + yaiZ HEPCGN_07280 0.70 -0.7 189,487 + yaiZ HEPCGN_07280 0.70 -0.3 189,487 + yaiZ HEPCGN_07280 0.70 -0.9 189,488 - yaiZ HEPCGN_07280 0.71 -0.3 189,488 - yaiZ HEPCGN_07280 0.71 -0.2 189,489 + yaiZ HEPCGN_07280 0.71 +0.2 189,490 - yaiZ HEPCGN_07280 0.72 +0.2 189,490 - yaiZ HEPCGN_07280 0.72 +1.9 189,510 - yaiZ HEPCGN_07280 0.81 +0.1 189,512 + yaiZ HEPCGN_07280 0.82 -0.2 189,512 + yaiZ HEPCGN_07280 0.82 -2.3 189,513 - yaiZ HEPCGN_07280 0.83 -0.9 189,513 - yaiZ HEPCGN_07280 0.83 +2.7 189,513 - yaiZ HEPCGN_07280 0.83 -0.0 189,584 + -0.8 189,645 + +0.9 189,808 + -1.0 189,809 - -0.3 189,851 + yaiY HEPCGN_07285 0.14 -2.3 190,017 + yaiY HEPCGN_07285 0.67 -1.1 190,053 + yaiY HEPCGN_07285 0.79 -1.5 190,123 - +0.2 190,150 + -1.6 190,151 - -1.1 190,186 + +0.1 190,187 - -1.3 190,586 + yaiW HEPCGN_07290 0.38 -0.5 190,599 + yaiW HEPCGN_07290 0.39 +0.4 190,626 + yaiW HEPCGN_07290 0.41 -2.6 190,627 - yaiW HEPCGN_07290 0.41 +2.4 190,630 + yaiW HEPCGN_07290 0.42 -1.0 190,708 + yaiW HEPCGN_07290 0.49 +1.5 190,708 + yaiW HEPCGN_07290 0.49 +0.2 190,843 + yaiW HEPCGN_07290 0.61 +0.1 190,976 + yaiW HEPCGN_07290 0.73 +0.3 191,005 - yaiW HEPCGN_07290 0.76 -0.1
Or see this region's nucleotide sequence