Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cspB and HEPCGN_06340 are separated by 601 nucleotides HEPCGN_06340 and essD are separated by 41 nucleotides essD and HEPCGN_06350 are separated by 4 nucleotides HEPCGN_06350 and rrrQ overlap by 4 nucleotides
HEPCGN_06335: cspB - cold shock-like protein CspB, at 1,132,648 to 1,132,863
cspB
HEPCGN_06340: HEPCGN_06340 - hypothetical protein, at 1,133,465 to 1,133,584
_06340
HEPCGN_06345: essD - phage lysis protein EssD, at 1,133,626 to 1,133,832
essD
HEPCGN_06350: HEPCGN_06350 - Uncharacterized protein YdfR, at 1,133,837 to 1,134,148
_06350
HEPCGN_06355: rrrQ - putative prophage lysozyme, at 1,134,145 to 1,134,678
rrrQ
Position (kb) 1133
1134 Strain fitness (log2 ratio) -1
0
1
2 at 1132.510 kb on + strand at 1132.644 kb on + strand at 1132.882 kb on - strand at 1132.959 kb on + strand at 1132.973 kb on - strand at 1132.973 kb on - strand at 1133.080 kb on + strand at 1133.110 kb on - strand at 1133.353 kb on - strand at 1133.470 kb on + strand at 1133.555 kb on + strand, within HEPCGN_06340 at 1133.617 kb on - strand at 1133.811 kb on + strand, within essD at 1133.830 kb on + strand at 1133.831 kb on - strand at 1133.993 kb on + strand, within HEPCGN_06350 at 1134.071 kb on + strand, within HEPCGN_06350 at 1134.145 kb on - strand at 1134.145 kb on - strand at 1134.221 kb on + strand, within rrrQ at 1134.221 kb on + strand, within rrrQ at 1134.287 kb on + strand, within rrrQ at 1134.475 kb on + strand, within rrrQ at 1134.514 kb on + strand, within rrrQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,132,510 + +0.9 1,132,644 + +1.6 1,132,882 - +0.7 1,132,959 + +0.5 1,132,973 - +1.3 1,132,973 - +2.0 1,133,080 + +0.9 1,133,110 - -1.3 1,133,353 - -1.1 1,133,470 + -0.5 1,133,555 + HEPCGN_06340 0.75 -0.9 1,133,617 - -1.4 1,133,811 + essD HEPCGN_06345 0.89 +0.7 1,133,830 + +0.1 1,133,831 - +0.2 1,133,993 + HEPCGN_06350 0.50 -1.1 1,134,071 + HEPCGN_06350 0.75 +0.2 1,134,145 - -0.1 1,134,145 - -1.4 1,134,221 + rrrQ HEPCGN_06355 0.14 -1.0 1,134,221 + rrrQ HEPCGN_06355 0.14 -0.5 1,134,287 + rrrQ HEPCGN_06355 0.27 +0.3 1,134,475 + rrrQ HEPCGN_06355 0.62 -1.1 1,134,514 + rrrQ HEPCGN_06355 0.69 -1.2
Or see this region's nucleotide sequence