Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05340

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchbC and chbA are separated by 50 nucleotideschbA and chbR are separated by 10 nucleotideschbR and celF are separated by 103 nucleotides HEPCGN_05330: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 940,597 to 941,955 chbC HEPCGN_05335: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 942,006 to 942,356 chbA HEPCGN_05340: chbR - transcriptional regulator ChbR, at 942,367 to 943,206 chbR HEPCGN_05345: celF - 6-phospho-beta-glucosidase, at 943,310 to 944,662 celF Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 941.529 kb on - strand, within chbCat 941.726 kb on - strand, within chbCat 941.736 kb on + strand, within chbCat 942.006 kb on - strandat 942.077 kb on + strand, within chbAat 942.077 kb on + strand, within chbAat 942.077 kb on + strand, within chbAat 942.242 kb on + strand, within chbAat 942.287 kb on - strand, within chbAat 942.325 kb on + strandat 942.527 kb on - strand, within chbRat 942.654 kb on + strand, within chbRat 942.716 kb on + strand, within chbRat 942.872 kb on + strand, within chbRat 943.613 kb on - strand, within celFat 943.620 kb on + strand, within celFat 943.748 kb on - strand, within celFat 943.748 kb on - strand, within celFat 943.894 kb on + strand, within celF

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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941,529 - chbC HEPCGN_05330 0.69 -0.1
941,726 - chbC HEPCGN_05330 0.83 -0.2
941,736 + chbC HEPCGN_05330 0.84 -0.5
942,006 - +2.1
942,077 + chbA HEPCGN_05335 0.20 +0.4
942,077 + chbA HEPCGN_05335 0.20 -0.3
942,077 + chbA HEPCGN_05335 0.20 -0.6
942,242 + chbA HEPCGN_05335 0.67 -0.3
942,287 - chbA HEPCGN_05335 0.80 +1.5
942,325 + +0.6
942,527 - chbR HEPCGN_05340 0.19 +0.7
942,654 + chbR HEPCGN_05340 0.34 -1.0
942,716 + chbR HEPCGN_05340 0.42 +0.2
942,872 + chbR HEPCGN_05340 0.60 -2.2
943,613 - celF HEPCGN_05345 0.22 -3.2
943,620 + celF HEPCGN_05345 0.23 -1.3
943,748 - celF HEPCGN_05345 0.32 +0.9
943,748 - celF HEPCGN_05345 0.32 +1.6
943,894 + celF HEPCGN_05345 0.43 +1.6

Or see this region's nucleotide sequence