Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04435 and HEPCGN_04440 are separated by 29 nucleotides HEPCGN_04440 and xerD are separated by 131 nucleotides xerD and yecA are separated by 356 nucleotides
HEPCGN_04435: HEPCGN_04435 - Putative transmembrane protein, at 771,941 to 772,591
_04435
HEPCGN_04440: HEPCGN_04440 - DUF2511 domain-containing protein, at 772,621 to 772,968
_04440
HEPCGN_04445: xerD - integrase, at 773,100 to 773,975
xerD
HEPCGN_04450: yecA - UPF0149 family protein YecA, at 774,332 to 774,997
yecA
Position (kb) 773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 772.138 kb on + strand, within HEPCGN_04435 at 772.198 kb on + strand, within HEPCGN_04435 at 772.208 kb on - strand, within HEPCGN_04435 at 772.285 kb on + strand, within HEPCGN_04435 at 772.296 kb on + strand, within HEPCGN_04435 at 772.296 kb on + strand, within HEPCGN_04435 at 772.303 kb on - strand, within HEPCGN_04435 at 772.360 kb on + strand, within HEPCGN_04435 at 772.394 kb on - strand, within HEPCGN_04435 at 772.643 kb on + strand at 772.737 kb on + strand, within HEPCGN_04440 at 772.801 kb on - strand, within HEPCGN_04440 at 772.875 kb on + strand, within HEPCGN_04440 at 772.893 kb on + strand, within HEPCGN_04440 at 772.938 kb on + strand at 772.956 kb on - strand at 772.963 kb on - strand at 773.181 kb on + strand at 773.288 kb on + strand, within xerD at 773.376 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.380 kb on + strand, within xerD at 773.381 kb on - strand, within xerD at 773.491 kb on + strand, within xerD at 773.739 kb on + strand, within xerD at 773.763 kb on - strand, within xerD at 773.797 kb on + strand, within xerD at 773.891 kb on - strand at 773.999 kb on + strand at 774.222 kb on + strand at 774.267 kb on + strand at 774.290 kb on + strand at 774.290 kb on + strand at 774.290 kb on + strand at 774.291 kb on - strand at 774.393 kb on - strand at 774.393 kb on - strand at 774.578 kb on - strand, within yecA at 774.692 kb on + strand, within yecA at 774.693 kb on - strand, within yecA at 774.694 kb on + strand, within yecA at 774.694 kb on + strand, within yecA at 774.834 kb on + strand, within yecA at 774.834 kb on + strand, within yecA at 774.864 kb on + strand, within yecA at 774.864 kb on + strand, within yecA at 774.872 kb on + strand, within yecA at 774.872 kb on + strand, within yecA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 772,138 + HEPCGN_04435 0.30 -0.5 772,198 + HEPCGN_04435 0.39 +1.1 772,208 - HEPCGN_04435 0.41 -0.9 772,285 + HEPCGN_04435 0.53 -1.7 772,296 + HEPCGN_04435 0.55 +1.9 772,296 + HEPCGN_04435 0.55 -0.6 772,303 - HEPCGN_04435 0.56 -1.5 772,360 + HEPCGN_04435 0.64 -0.3 772,394 - HEPCGN_04435 0.70 +1.5 772,643 + +0.3 772,737 + HEPCGN_04440 0.33 +0.1 772,801 - HEPCGN_04440 0.52 -0.2 772,875 + HEPCGN_04440 0.73 +1.3 772,893 + HEPCGN_04440 0.78 +0.2 772,938 + +1.1 772,956 - +0.8 772,963 - +1.1 773,181 + -1.7 773,288 + xerD HEPCGN_04445 0.21 -3.9 773,376 + xerD HEPCGN_04445 0.32 +0.1 773,380 + xerD HEPCGN_04445 0.32 -1.1 773,380 + xerD HEPCGN_04445 0.32 -0.1 773,380 + xerD HEPCGN_04445 0.32 -1.0 773,381 - xerD HEPCGN_04445 0.32 -2.0 773,491 + xerD HEPCGN_04445 0.45 -0.2 773,739 + xerD HEPCGN_04445 0.73 -0.5 773,763 - xerD HEPCGN_04445 0.76 -1.5 773,797 + xerD HEPCGN_04445 0.80 -0.4 773,891 - -1.2 773,999 + -0.2 774,222 + +1.3 774,267 + +0.9 774,290 + -0.8 774,290 + +0.6 774,290 + -1.9 774,291 - -0.8 774,393 - +0.8 774,393 - +0.9 774,578 - yecA HEPCGN_04450 0.37 -0.8 774,692 + yecA HEPCGN_04450 0.54 +0.2 774,693 - yecA HEPCGN_04450 0.54 +1.8 774,694 + yecA HEPCGN_04450 0.54 -0.3 774,694 + yecA HEPCGN_04450 0.54 +0.4 774,834 + yecA HEPCGN_04450 0.75 -0.2 774,834 + yecA HEPCGN_04450 0.75 +1.4 774,864 + yecA HEPCGN_04450 0.80 +1.2 774,864 + yecA HEPCGN_04450 0.80 -0.0 774,872 + yecA HEPCGN_04450 0.81 +0.2 774,872 + yecA HEPCGN_04450 0.81 -0.2
Or see this region's nucleotide sequence