Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsrB and rcsA are separated by 43 nucleotides rcsA and fliR are separated by 289 nucleotides fliR and fliQ are separated by 74 nucleotides fliQ and fliP are separated by 9 nucleotides
HEPCGN_04005: dsrB - protein DsrB, at 704,529 to 704,717
dsrB
HEPCGN_04010: rcsA - transcriptional regulator RcsA, at 704,761 to 705,384
rcsA
HEPCGN_04015: fliR - flagellar type III secretion system protein FliR, at 705,674 to 706,393
fliR
HEPCGN_04020: fliQ - flagellar biosynthesis protein FliQ, at 706,468 to 706,737
fliQ
HEPCGN_04025: fliP - flagellar type III secretion system pore protein FliP, at 706,747 to 707,484
fliP
Position (kb) 705
706
707 Strain fitness (log2 ratio) -1
0
1 at 704.715 kb on + strand at 704.796 kb on + strand at 704.820 kb on - strand at 704.863 kb on - strand, within rcsA at 705.149 kb on - strand, within rcsA at 705.226 kb on - strand, within rcsA at 705.228 kb on + strand, within rcsA at 705.319 kb on - strand, within rcsA at 705.330 kb on - strand at 705.353 kb on + strand at 705.501 kb on + strand at 705.701 kb on - strand at 706.040 kb on - strand, within fliR at 706.414 kb on - strand at 706.414 kb on - strand at 706.421 kb on + strand at 706.422 kb on - strand at 706.422 kb on - strand at 706.425 kb on + strand at 706.481 kb on + strand at 706.482 kb on - strand at 706.512 kb on - strand, within fliQ at 706.548 kb on + strand, within fliQ at 706.565 kb on - strand, within fliQ at 706.584 kb on + strand, within fliQ at 706.754 kb on + strand at 707.185 kb on - strand, within fliP at 707.221 kb on + strand, within fliP at 707.229 kb on + strand, within fliP at 707.229 kb on + strand, within fliP at 707.229 kb on + strand, within fliP at 707.280 kb on + strand, within fliP at 707.280 kb on + strand, within fliP at 707.393 kb on - strand, within fliP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 704,715 + -0.6 704,796 + -1.1 704,820 - -0.3 704,863 - rcsA HEPCGN_04010 0.16 +0.6 705,149 - rcsA HEPCGN_04010 0.62 -1.3 705,226 - rcsA HEPCGN_04010 0.75 -1.1 705,228 + rcsA HEPCGN_04010 0.75 +0.3 705,319 - rcsA HEPCGN_04010 0.89 +0.1 705,330 - -0.3 705,353 + +0.8 705,501 + -0.4 705,701 - -0.4 706,040 - fliR HEPCGN_04015 0.51 -1.6 706,414 - +0.5 706,414 - +0.3 706,421 + -0.1 706,422 - -0.3 706,422 - +0.5 706,425 + +0.5 706,481 + -0.3 706,482 - +0.0 706,512 - fliQ HEPCGN_04020 0.16 -0.6 706,548 + fliQ HEPCGN_04020 0.30 +0.6 706,565 - fliQ HEPCGN_04020 0.36 +0.6 706,584 + fliQ HEPCGN_04020 0.43 -0.7 706,754 + +0.0 707,185 - fliP HEPCGN_04025 0.59 +1.2 707,221 + fliP HEPCGN_04025 0.64 +0.7 707,229 + fliP HEPCGN_04025 0.65 +0.7 707,229 + fliP HEPCGN_04025 0.65 +0.6 707,229 + fliP HEPCGN_04025 0.65 -0.6 707,280 + fliP HEPCGN_04025 0.72 +0.2 707,280 + fliP HEPCGN_04025 0.72 -1.1 707,393 - fliP HEPCGN_04025 0.88 +0.3
Or see this region's nucleotide sequence