Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03690

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_03685 and HEPCGN_03690 are separated by 314 nucleotidesHEPCGN_03690 and HEPCGN_03695 are separated by 12 nucleotides HEPCGN_03685: HEPCGN_03685 - SMEK domain-containing protein, at 654,699 to 655,598 _03685 HEPCGN_03690: HEPCGN_03690 - Tellurite resistance protein TehB, at 655,913 to 656,566 _03690 HEPCGN_03695: HEPCGN_03695 - Uncharacterized protein YmfE, at 656,579 to 657,274 _03695 Position (kb) 655 656 657Strain fitness (log2 ratio) -2 -1 0 1 2at 655.289 kb on + strand, within HEPCGN_03685at 655.411 kb on + strand, within HEPCGN_03685at 655.411 kb on + strand, within HEPCGN_03685at 655.481 kb on + strand, within HEPCGN_03685at 655.718 kb on + strandat 655.721 kb on + strandat 655.722 kb on - strandat 655.725 kb on + strandat 655.739 kb on - strandat 655.743 kb on + strandat 655.764 kb on - strandat 656.006 kb on - strand, within HEPCGN_03690at 656.037 kb on + strand, within HEPCGN_03690at 657.035 kb on + strand, within HEPCGN_03695at 657.142 kb on - strand, within HEPCGN_03695at 657.537 kb on + strandat 657.537 kb on + strandat 657.538 kb on - strandat 657.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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655,289 + HEPCGN_03685 0.66 -0.8
655,411 + HEPCGN_03685 0.79 -0.9
655,411 + HEPCGN_03685 0.79 -0.6
655,481 + HEPCGN_03685 0.87 -0.6
655,718 + -1.9
655,721 + +0.7
655,722 - +0.7
655,725 + +0.1
655,739 - +0.1
655,743 + +0.5
655,764 - -0.3
656,006 - HEPCGN_03690 0.14 -1.1
656,037 + HEPCGN_03690 0.19 -0.4
657,035 + HEPCGN_03695 0.66 -1.5
657,142 - HEPCGN_03695 0.81 +0.1
657,537 + -2.6
657,537 + -0.0
657,538 - -0.1
657,538 - +2.2

Or see this region's nucleotide sequence