Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03265

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyeeE and yeeD are separated by 13 nucleotidesyeeD and sbcB are separated by 42 nucleotides HEPCGN_03260: yeeE - transport protein YeeE, at 562,170 to 563,174 yeeE HEPCGN_03265: yeeD - Putative sulfur carrier protein YeeD, at 563,188 to 563,415 yeeD HEPCGN_03270: sbcB - exodeoxyribonuclease I, at 563,458 to 564,885 sbcB Position (kb) 563 564Strain fitness (log2 ratio) -2 -1 0 1 2 3at 562.215 kb on + strandat 562.216 kb on - strandat 562.216 kb on - strandat 562.315 kb on - strand, within yeeEat 562.351 kb on + strand, within yeeEat 562.351 kb on + strand, within yeeEat 562.351 kb on + strand, within yeeEat 562.461 kb on + strand, within yeeEat 562.461 kb on + strand, within yeeEat 562.461 kb on + strand, within yeeEat 562.463 kb on + strand, within yeeEat 562.464 kb on - strand, within yeeEat 562.528 kb on - strand, within yeeEat 562.541 kb on + strand, within yeeEat 562.541 kb on + strand, within yeeEat 562.548 kb on - strand, within yeeEat 562.730 kb on - strand, within yeeEat 562.785 kb on - strand, within yeeEat 562.855 kb on - strand, within yeeEat 562.859 kb on + strand, within yeeEat 562.963 kb on + strand, within yeeEat 562.963 kb on + strand, within yeeEat 562.964 kb on - strand, within yeeEat 562.964 kb on - strand, within yeeEat 563.087 kb on + strandat 563.173 kb on - strandat 563.176 kb on + strandat 563.177 kb on - strandat 563.240 kb on + strand, within yeeDat 563.241 kb on - strand, within yeeDat 563.288 kb on + strand, within yeeDat 563.289 kb on - strand, within yeeDat 563.525 kb on + strandat 563.558 kb on + strandat 563.624 kb on + strand, within sbcBat 563.624 kb on + strand, within sbcBat 563.719 kb on - strand, within sbcBat 563.784 kb on - strand, within sbcBat 563.784 kb on - strand, within sbcBat 563.784 kb on - strand, within sbcBat 563.802 kb on + strand, within sbcBat 563.947 kb on - strand, within sbcBat 563.974 kb on - strand, within sbcBat 563.974 kb on - strand, within sbcBat 564.036 kb on - strand, within sbcBat 564.037 kb on + strand, within sbcBat 564.105 kb on + strand, within sbcBat 564.316 kb on - strand, within sbcBat 564.324 kb on - strand, within sbcBat 564.355 kb on - strand, within sbcB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
562,215 + +0.4
562,216 - -0.6
562,216 - -0.4
562,315 - yeeE HEPCGN_03260 0.14 -0.5
562,351 + yeeE HEPCGN_03260 0.18 -0.7
562,351 + yeeE HEPCGN_03260 0.18 -1.7
562,351 + yeeE HEPCGN_03260 0.18 -0.5
562,461 + yeeE HEPCGN_03260 0.29 -1.7
562,461 + yeeE HEPCGN_03260 0.29 +0.7
562,461 + yeeE HEPCGN_03260 0.29 -1.5
562,463 + yeeE HEPCGN_03260 0.29 +0.2
562,464 - yeeE HEPCGN_03260 0.29 +0.3
562,528 - yeeE HEPCGN_03260 0.36 -0.4
562,541 + yeeE HEPCGN_03260 0.37 +0.7
562,541 + yeeE HEPCGN_03260 0.37 +1.9
562,548 - yeeE HEPCGN_03260 0.38 +1.0
562,730 - yeeE HEPCGN_03260 0.56 +0.5
562,785 - yeeE HEPCGN_03260 0.61 -2.4
562,855 - yeeE HEPCGN_03260 0.68 +0.1
562,859 + yeeE HEPCGN_03260 0.69 -0.3
562,963 + yeeE HEPCGN_03260 0.79 +0.3
562,963 + yeeE HEPCGN_03260 0.79 -2.4
562,964 - yeeE HEPCGN_03260 0.79 +0.9
562,964 - yeeE HEPCGN_03260 0.79 -1.3
563,087 + -0.3
563,173 - -0.3
563,176 + -0.9
563,177 - -0.2
563,240 + yeeD HEPCGN_03265 0.23 -0.7
563,241 - yeeD HEPCGN_03265 0.23 -2.5
563,288 + yeeD HEPCGN_03265 0.44 -0.4
563,289 - yeeD HEPCGN_03265 0.44 -1.7
563,525 + -1.1
563,558 + +0.1
563,624 + sbcB HEPCGN_03270 0.12 +1.9
563,624 + sbcB HEPCGN_03270 0.12 +0.1
563,719 - sbcB HEPCGN_03270 0.18 +0.5
563,784 - sbcB HEPCGN_03270 0.23 +1.2
563,784 - sbcB HEPCGN_03270 0.23 +1.5
563,784 - sbcB HEPCGN_03270 0.23 +0.8
563,802 + sbcB HEPCGN_03270 0.24 +0.2
563,947 - sbcB HEPCGN_03270 0.34 -0.8
563,974 - sbcB HEPCGN_03270 0.36 +3.2
563,974 - sbcB HEPCGN_03270 0.36 +1.5
564,036 - sbcB HEPCGN_03270 0.40 +1.5
564,037 + sbcB HEPCGN_03270 0.41 +1.6
564,105 + sbcB HEPCGN_03270 0.45 +0.8
564,316 - sbcB HEPCGN_03270 0.60 +0.4
564,324 - sbcB HEPCGN_03270 0.61 +1.6
564,355 - sbcB HEPCGN_03270 0.63 +0.3

Or see this region's nucleotide sequence