Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02315 and HEPCGN_02320 are separated by 10 nucleotides HEPCGN_02320 and HEPCGN_02325 are separated by 5 nucleotides HEPCGN_02325 and HEPCGN_02330 are separated by 194 nucleotides HEPCGN_02330 and HEPCGN_02335 are separated by 128 nucleotides HEPCGN_02335 and HEPCGN_02340 are separated by 103 nucleotides
HEPCGN_02315: HEPCGN_02315 - MarR family transcriptional regulator, at 382,738 to 382,986
_02315
HEPCGN_02320: HEPCGN_02320 - hypothetical protein, at 382,997 to 383,578
_02320
HEPCGN_02325: HEPCGN_02325 - hypothetical protein, at 383,584 to 383,772
_02325
HEPCGN_02330: HEPCGN_02330 - hypothetical protein, at 383,967 to 384,332
_02330
HEPCGN_02335: HEPCGN_02335 - transcriptional regulator, at 384,461 to 384,964
_02335
HEPCGN_02340: HEPCGN_02340 - LexA family transcriptional repressor, at 385,068 to 385,724
_02340
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 383.033 kb on - strand at 383.254 kb on - strand, within HEPCGN_02320 at 383.406 kb on - strand, within HEPCGN_02320 at 383.406 kb on - strand, within HEPCGN_02320 at 383.443 kb on + strand, within HEPCGN_02320 at 383.461 kb on + strand, within HEPCGN_02320 at 383.462 kb on - strand, within HEPCGN_02320 at 383.496 kb on - strand, within HEPCGN_02320 at 383.917 kb on - strand at 384.066 kb on - strand, within HEPCGN_02330 at 384.243 kb on + strand, within HEPCGN_02330 at 384.350 kb on + strand at 384.350 kb on + strand at 384.351 kb on - strand at 384.364 kb on + strand at 384.364 kb on + strand at 384.367 kb on - strand at 384.433 kb on + strand at 384.457 kb on + strand at 384.572 kb on - strand, within HEPCGN_02335 at 384.585 kb on - strand, within HEPCGN_02335 at 384.614 kb on - strand, within HEPCGN_02335 at 384.614 kb on - strand, within HEPCGN_02335 at 384.640 kb on + strand, within HEPCGN_02335 at 384.817 kb on + strand, within HEPCGN_02335 at 384.817 kb on + strand, within HEPCGN_02335 at 384.818 kb on - strand, within HEPCGN_02335 at 384.818 kb on - strand, within HEPCGN_02335 at 384.854 kb on + strand, within HEPCGN_02335 at 384.854 kb on + strand, within HEPCGN_02335 at 384.855 kb on - strand, within HEPCGN_02335 at 384.896 kb on + strand, within HEPCGN_02335 at 384.897 kb on - strand, within HEPCGN_02335 at 384.897 kb on - strand, within HEPCGN_02335
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 383,033 - -2.4 383,254 - HEPCGN_02320 0.44 -1.1 383,406 - HEPCGN_02320 0.70 +0.3 383,406 - HEPCGN_02320 0.70 -0.3 383,443 + HEPCGN_02320 0.77 -1.2 383,461 + HEPCGN_02320 0.80 -0.2 383,462 - HEPCGN_02320 0.80 -0.3 383,496 - HEPCGN_02320 0.86 +0.5 383,917 - -0.8 384,066 - HEPCGN_02330 0.27 -0.8 384,243 + HEPCGN_02330 0.75 -0.7 384,350 + -0.4 384,350 + -1.1 384,351 - -1.2 384,364 + +0.9 384,364 + -0.6 384,367 - +0.7 384,433 + -2.3 384,457 + -0.5 384,572 - HEPCGN_02335 0.22 +0.9 384,585 - HEPCGN_02335 0.25 -0.1 384,614 - HEPCGN_02335 0.30 -1.7 384,614 - HEPCGN_02335 0.30 -1.2 384,640 + HEPCGN_02335 0.36 -0.3 384,817 + HEPCGN_02335 0.71 +0.1 384,817 + HEPCGN_02335 0.71 +0.0 384,818 - HEPCGN_02335 0.71 -1.0 384,818 - HEPCGN_02335 0.71 -3.4 384,854 + HEPCGN_02335 0.78 +1.1 384,854 + HEPCGN_02335 0.78 -0.3 384,855 - HEPCGN_02335 0.78 -0.2 384,896 + HEPCGN_02335 0.86 +0.1 384,897 - HEPCGN_02335 0.87 +0.9 384,897 - HEPCGN_02335 0.87 -0.2
Or see this region's nucleotide sequence