Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpA and ybfA are separated by 401 nucleotides ybfA and ybgA are separated by 100 nucleotides ybgA and phrB overlap by 4 nucleotides
HEPCGN_01175: kdpA - potassium-transporting ATPase subunit KdpA, at 161,628 to 163,301
kdpA
HEPCGN_01180: ybfA - Uncharacterized protein YbfA, at 163,703 to 163,909
ybfA
HEPCGN_01185: ybgA - DUF1722 domain-containing protein, at 164,010 to 164,519
ybgA
HEPCGN_01190: phrB - deoxyribodipyrimidine photo-lyase, at 164,516 to 165,934
phrB
Position (kb) 163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 162.735 kb on - strand, within kdpA at 162.925 kb on + strand, within kdpA at 162.947 kb on + strand, within kdpA at 162.950 kb on - strand, within kdpA at 163.046 kb on - strand, within kdpA at 163.117 kb on + strand, within kdpA at 163.117 kb on + strand, within kdpA at 163.118 kb on - strand, within kdpA at 163.118 kb on - strand, within kdpA at 163.200 kb on + strand at 163.200 kb on + strand at 163.263 kb on + strand at 163.338 kb on + strand at 163.346 kb on + strand at 163.410 kb on - strand at 163.509 kb on + strand at 163.569 kb on - strand at 163.579 kb on + strand at 163.631 kb on + strand at 163.632 kb on - strand at 163.702 kb on + strand at 163.755 kb on - strand, within ybfA at 163.826 kb on + strand, within ybfA at 163.915 kb on - strand at 163.921 kb on + strand at 163.977 kb on - strand at 163.983 kb on - strand at 164.008 kb on + strand at 164.069 kb on - strand, within ybgA at 164.129 kb on + strand, within ybgA at 164.221 kb on - strand, within ybgA at 164.224 kb on - strand, within ybgA at 164.224 kb on - strand, within ybgA at 164.285 kb on + strand, within ybgA at 164.286 kb on - strand, within ybgA at 164.314 kb on - strand, within ybgA at 164.424 kb on + strand, within ybgA at 164.424 kb on + strand, within ybgA at 164.425 kb on - strand, within ybgA at 164.426 kb on + strand, within ybgA at 164.436 kb on + strand, within ybgA at 164.492 kb on + strand at 164.492 kb on + strand at 164.493 kb on - strand at 164.493 kb on - strand at 164.515 kb on + strand at 164.515 kb on + strand at 164.516 kb on - strand at 164.551 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.650 kb on + strand at 164.653 kb on + strand at 164.776 kb on - strand, within phrB at 164.779 kb on + strand, within phrB at 164.819 kb on + strand, within phrB at 164.820 kb on - strand, within phrB at 164.822 kb on - strand, within phrB at 164.825 kb on + strand, within phrB at 164.825 kb on + strand, within phrB at 164.831 kb on + strand, within phrB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 162,735 - kdpA HEPCGN_01175 0.66 -0.5 162,925 + kdpA HEPCGN_01175 0.77 +0.1 162,947 + kdpA HEPCGN_01175 0.79 -2.0 162,950 - kdpA HEPCGN_01175 0.79 +0.1 163,046 - kdpA HEPCGN_01175 0.85 +0.3 163,117 + kdpA HEPCGN_01175 0.89 -0.1 163,117 + kdpA HEPCGN_01175 0.89 -1.3 163,118 - kdpA HEPCGN_01175 0.89 +0.1 163,118 - kdpA HEPCGN_01175 0.89 -0.1 163,200 + +0.4 163,200 + +1.6 163,263 + +0.5 163,338 + -0.2 163,346 + -0.4 163,410 - -0.3 163,509 + +0.2 163,569 - -1.5 163,579 + +0.9 163,631 + -0.3 163,632 - -0.1 163,702 + +0.7 163,755 - ybfA HEPCGN_01180 0.25 -0.8 163,826 + ybfA HEPCGN_01180 0.59 -0.7 163,915 - -0.4 163,921 + -0.4 163,977 - -0.1 163,983 - +0.3 164,008 + -1.2 164,069 - ybgA HEPCGN_01185 0.12 -0.1 164,129 + ybgA HEPCGN_01185 0.23 -1.1 164,221 - ybgA HEPCGN_01185 0.41 -0.0 164,224 - ybgA HEPCGN_01185 0.42 +0.1 164,224 - ybgA HEPCGN_01185 0.42 -0.4 164,285 + ybgA HEPCGN_01185 0.54 +1.7 164,286 - ybgA HEPCGN_01185 0.54 -0.6 164,314 - ybgA HEPCGN_01185 0.60 -1.1 164,424 + ybgA HEPCGN_01185 0.81 -0.1 164,424 + ybgA HEPCGN_01185 0.81 -0.3 164,425 - ybgA HEPCGN_01185 0.81 +0.2 164,426 + ybgA HEPCGN_01185 0.82 +0.0 164,436 + ybgA HEPCGN_01185 0.84 -0.4 164,492 + +0.1 164,492 + +0.4 164,493 - +0.1 164,493 - +0.8 164,515 + +0.5 164,515 + +0.6 164,516 - -0.1 164,551 - -2.1 164,619 - +0.5 164,619 - -0.3 164,619 - -0.1 164,619 - +0.2 164,619 - +0.7 164,650 + +0.8 164,653 + -0.1 164,776 - phrB HEPCGN_01190 0.18 -0.7 164,779 + phrB HEPCGN_01190 0.19 +0.8 164,819 + phrB HEPCGN_01190 0.21 -0.2 164,820 - phrB HEPCGN_01190 0.21 +0.7 164,822 - phrB HEPCGN_01190 0.22 -3.1 164,825 + phrB HEPCGN_01190 0.22 -1.4 164,825 + phrB HEPCGN_01190 0.22 +0.6 164,831 + phrB HEPCGN_01190 0.22 -0.2
Or see this region's nucleotide sequence