Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00630

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnfsB and ybdF are separated by 78 nucleotidesybdF and ybdJ are separated by 64 nucleotidesybdJ and ybdK are separated by 65 nucleotides HEPCGN_00620: nfsB - oxygen-insensitive NAD(P)H nitroreductase, at 51,433 to 52,086 nfsB HEPCGN_00625: ybdF - MmcQ/YjbR family DNA-binding protein, at 52,165 to 52,548 ybdF HEPCGN_00630: ybdJ - Uncharacterized protein YbdJ, at 52,613 to 52,861 ybdJ HEPCGN_00635: ybdK - YbdK family carboxylate-amine ligase, at 52,927 to 54,045 ybdK Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1at 51.656 kb on + strand, within nfsBat 51.885 kb on - strand, within nfsBat 51.980 kb on + strand, within nfsBat 51.980 kb on + strand, within nfsBat 51.981 kb on - strand, within nfsBat 52.048 kb on - strandat 52.166 kb on + strandat 52.175 kb on - strandat 52.212 kb on + strand, within ybdFat 52.314 kb on + strand, within ybdFat 52.348 kb on + strand, within ybdFat 52.349 kb on - strand, within ybdFat 52.349 kb on - strand, within ybdFat 52.349 kb on - strand, within ybdFat 52.428 kb on + strand, within ybdFat 52.428 kb on + strand, within ybdFat 52.543 kb on - strandat 52.584 kb on - strandat 52.584 kb on - strandat 52.645 kb on + strand, within ybdJat 52.645 kb on + strand, within ybdJat 52.663 kb on - strand, within ybdJat 52.847 kb on + strandat 52.901 kb on + strandat 53.076 kb on + strand, within ybdKat 53.077 kb on - strand, within ybdKat 53.205 kb on + strand, within ybdKat 53.207 kb on + strand, within ybdKat 53.409 kb on - strand, within ybdKat 53.535 kb on + strand, within ybdKat 53.535 kb on + strand, within ybdKat 53.535 kb on + strand, within ybdKat 53.535 kb on + strand, within ybdKat 53.535 kb on + strand, within ybdKat 53.535 kb on + strand, within ybdKat 53.536 kb on - strand, within ybdKat 53.536 kb on - strand, within ybdKat 53.536 kb on - strand, within ybdKat 53.536 kb on - strand, within ybdKat 53.536 kb on - strand, within ybdKat 53.537 kb on + strand, within ybdKat 53.537 kb on + strand, within ybdKat 53.537 kb on + strand, within ybdKat 53.537 kb on + strand, within ybdKat 53.537 kb on + strand, within ybdKat 53.600 kb on + strand, within ybdKat 53.601 kb on - strand, within ybdK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
51,656 + nfsB HEPCGN_00620 0.34 -1.6
51,885 - nfsB HEPCGN_00620 0.69 -1.0
51,980 + nfsB HEPCGN_00620 0.84 +1.1
51,980 + nfsB HEPCGN_00620 0.84 -0.8
51,981 - nfsB HEPCGN_00620 0.84 -1.6
52,048 - -0.8
52,166 + -0.8
52,175 - -0.1
52,212 + ybdF HEPCGN_00625 0.12 -0.1
52,314 + ybdF HEPCGN_00625 0.39 -0.3
52,348 + ybdF HEPCGN_00625 0.48 -1.0
52,349 - ybdF HEPCGN_00625 0.48 +0.4
52,349 - ybdF HEPCGN_00625 0.48 -0.3
52,349 - ybdF HEPCGN_00625 0.48 +1.6
52,428 + ybdF HEPCGN_00625 0.68 -2.9
52,428 + ybdF HEPCGN_00625 0.68 +0.6
52,543 - -0.8
52,584 - +0.6
52,584 - -0.2
52,645 + ybdJ HEPCGN_00630 0.13 -2.1
52,645 + ybdJ HEPCGN_00630 0.13 -1.3
52,663 - ybdJ HEPCGN_00630 0.20 -0.2
52,847 + -0.6
52,901 + -0.7
53,076 + ybdK HEPCGN_00635 0.13 -1.1
53,077 - ybdK HEPCGN_00635 0.13 +0.6
53,205 + ybdK HEPCGN_00635 0.25 -0.2
53,207 + ybdK HEPCGN_00635 0.25 -2.5
53,409 - ybdK HEPCGN_00635 0.43 +0.6
53,535 + ybdK HEPCGN_00635 0.54 -3.3
53,535 + ybdK HEPCGN_00635 0.54 +0.6
53,535 + ybdK HEPCGN_00635 0.54 -1.5
53,535 + ybdK HEPCGN_00635 0.54 -1.7
53,535 + ybdK HEPCGN_00635 0.54 -0.2
53,535 + ybdK HEPCGN_00635 0.54 -0.2
53,536 - ybdK HEPCGN_00635 0.54 -0.3
53,536 - ybdK HEPCGN_00635 0.54 +0.2
53,536 - ybdK HEPCGN_00635 0.54 -3.3
53,536 - ybdK HEPCGN_00635 0.54 +1.0
53,536 - ybdK HEPCGN_00635 0.54 -0.7
53,537 + ybdK HEPCGN_00635 0.55 +1.2
53,537 + ybdK HEPCGN_00635 0.55 +0.6
53,537 + ybdK HEPCGN_00635 0.55 +0.6
53,537 + ybdK HEPCGN_00635 0.55 +0.7
53,537 + ybdK HEPCGN_00635 0.55 +0.4
53,600 + ybdK HEPCGN_00635 0.60 +0.3
53,601 - ybdK HEPCGN_00635 0.60 +1.1

Or see this region's nucleotide sequence