Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00595

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntibeB and cusF are separated by 23 nucleotidescusF and cusB are separated by 15 nucleotides HEPCGN_00590: ibeB - Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC, at 42,387 to 43,769 ibeB HEPCGN_00595: cusF - Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF, at 43,793 to 44,125 cusF HEPCGN_00600: cusB - Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB, at 44,141 to 45,364 cusB Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1at 42.873 kb on - strand, within ibeBat 42.959 kb on + strand, within ibeBat 43.014 kb on - strand, within ibeBat 43.048 kb on + strand, within ibeBat 43.103 kb on + strand, within ibeBat 43.620 kb on + strand, within ibeBat 43.673 kb on - strandat 43.708 kb on - strandat 43.823 kb on - strandat 43.847 kb on - strand, within cusFat 44.289 kb on - strand, within cusBat 44.329 kb on + strand, within cusBat 44.354 kb on + strand, within cusBat 44.386 kb on - strand, within cusBat 44.487 kb on - strand, within cusBat 44.496 kb on - strand, within cusBat 44.572 kb on - strand, within cusBat 44.634 kb on - strand, within cusBat 44.764 kb on + strand, within cusBat 44.765 kb on - strand, within cusBat 44.836 kb on + strand, within cusBat 44.932 kb on + strand, within cusBat 44.933 kb on - strand, within cusB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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42,873 - ibeB HEPCGN_00590 0.35 -0.0
42,959 + ibeB HEPCGN_00590 0.41 -0.9
43,014 - ibeB HEPCGN_00590 0.45 +0.9
43,048 + ibeB HEPCGN_00590 0.48 +0.3
43,103 + ibeB HEPCGN_00590 0.52 -1.9
43,620 + ibeB HEPCGN_00590 0.89 -1.1
43,673 - -2.5
43,708 - +0.6
43,823 - -1.3
43,847 - cusF HEPCGN_00595 0.16 -2.0
44,289 - cusB HEPCGN_00600 0.12 +1.0
44,329 + cusB HEPCGN_00600 0.15 -0.4
44,354 + cusB HEPCGN_00600 0.17 -0.6
44,386 - cusB HEPCGN_00600 0.20 +0.4
44,487 - cusB HEPCGN_00600 0.28 -3.3
44,496 - cusB HEPCGN_00600 0.29 -0.9
44,572 - cusB HEPCGN_00600 0.35 -2.1
44,634 - cusB HEPCGN_00600 0.40 +0.1
44,764 + cusB HEPCGN_00600 0.51 -0.2
44,765 - cusB HEPCGN_00600 0.51 +0.1
44,836 + cusB HEPCGN_00600 0.57 -0.9
44,932 + cusB HEPCGN_00600 0.65 +0.1
44,933 - cusB HEPCGN_00600 0.65 +0.7

Or see this region's nucleotide sequence