Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00380 and HEPCGN_00385 are separated by 208 nucleotides HEPCGN_00385 and HEPCGN_00390 overlap by 8 nucleotides HEPCGN_00390 and HEPCGN_00395 are separated by 2 nucleotides HEPCGN_00395 and HEPCGN_00400 are separated by 179 nucleotides
HEPCGN_00380: HEPCGN_00380 - hypothetical protein, at 3,239 to 3,541
_00380
HEPCGN_00385: HEPCGN_00385 - host cell division inhibitor Icd-like protein, at 3,750 to 4,115
_00385
HEPCGN_00390: HEPCGN_00390 - hypothetical protein, at 4,108 to 4,332
_00390
HEPCGN_00395: HEPCGN_00395 - hypothetical protein, at 4,335 to 4,622
_00395
HEPCGN_00400: HEPCGN_00400 - DNA primase, at 4,802 to 6,439
_00400
Position (kb) 4
5 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3.124 kb on + strand at 3.237 kb on - strand at 3.569 kb on - strand at 3.613 kb on - strand at 3.746 kb on + strand at 3.746 kb on + strand at 3.749 kb on + strand at 3.767 kb on + strand at 3.792 kb on + strand, within HEPCGN_00385 at 3.793 kb on - strand, within HEPCGN_00385 at 3.840 kb on - strand, within HEPCGN_00385 at 3.901 kb on - strand, within HEPCGN_00385 at 3.980 kb on + strand, within HEPCGN_00385 at 4.013 kb on + strand, within HEPCGN_00385 at 4.257 kb on + strand, within HEPCGN_00390 at 4.257 kb on + strand, within HEPCGN_00390 at 4.258 kb on - strand, within HEPCGN_00390 at 4.417 kb on - strand, within HEPCGN_00395 at 4.613 kb on + strand at 4.802 kb on - strand at 4.898 kb on - strand at 4.930 kb on + strand at 4.931 kb on - strand at 5.172 kb on - strand, within HEPCGN_00400 at 5.172 kb on - strand, within HEPCGN_00400 at 5.172 kb on - strand, within HEPCGN_00400 at 5.185 kb on - strand, within HEPCGN_00400 at 5.185 kb on - strand, within HEPCGN_00400 at 5.211 kb on + strand, within HEPCGN_00400 at 5.211 kb on + strand, within HEPCGN_00400 at 5.255 kb on + strand, within HEPCGN_00400 at 5.273 kb on - strand, within HEPCGN_00400
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,124 + -0.6 3,237 - -1.7 3,569 - -0.1 3,613 - -1.5 3,746 + -2.3 3,746 + -0.8 3,749 + -0.4 3,767 + -1.3 3,792 + HEPCGN_00385 0.11 -0.3 3,793 - HEPCGN_00385 0.12 -0.6 3,840 - HEPCGN_00385 0.25 -0.0 3,901 - HEPCGN_00385 0.41 +0.7 3,980 + HEPCGN_00385 0.63 -0.5 4,013 + HEPCGN_00385 0.72 +0.6 4,257 + HEPCGN_00390 0.66 -1.0 4,257 + HEPCGN_00390 0.66 -0.2 4,258 - HEPCGN_00390 0.67 -0.9 4,417 - HEPCGN_00395 0.28 -1.9 4,613 + -0.5 4,802 - +0.5 4,898 - -0.0 4,930 + +0.7 4,931 - -1.4 5,172 - HEPCGN_00400 0.23 +0.6 5,172 - HEPCGN_00400 0.23 +0.2 5,172 - HEPCGN_00400 0.23 +0.0 5,185 - HEPCGN_00400 0.23 +1.5 5,185 - HEPCGN_00400 0.23 -1.4 5,211 + HEPCGN_00400 0.25 -0.2 5,211 + HEPCGN_00400 0.25 +1.0 5,255 + HEPCGN_00400 0.28 -1.1 5,273 - HEPCGN_00400 0.29 +3.4
Or see this region's nucleotide sequence