Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS10045

Experiment: R2A motility; outer cut

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS10040 and ABZR88_RS10045 are separated by 365 nucleotidesABZR88_RS10045 and ABZR88_RS10050 are separated by 321 nucleotides ABZR88_RS10040: ABZR88_RS10040 - family 20 glycosylhydrolase, at 2,483,841 to 2,486,156 _RS10040 ABZR88_RS10045: ABZR88_RS10045 - hypothetical protein, at 2,486,522 to 2,487,409 _RS10045 ABZR88_RS10050: ABZR88_RS10050 - sorbosone dehydrogenase family protein, at 2,487,731 to 2,489,011 _RS10050 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2485.619 kb on - strand, within ABZR88_RS10040at 2485.718 kb on + strand, within ABZR88_RS10040at 2485.774 kb on + strand, within ABZR88_RS10040at 2485.983 kb on - strandat 2486.073 kb on - strandat 2486.115 kb on + strandat 2486.189 kb on + strandat 2486.501 kb on - strandat 2486.795 kb on - strand, within ABZR88_RS10045at 2486.815 kb on + strand, within ABZR88_RS10045at 2486.845 kb on + strand, within ABZR88_RS10045at 2486.846 kb on - strand, within ABZR88_RS10045at 2486.850 kb on + strand, within ABZR88_RS10045at 2486.880 kb on + strand, within ABZR88_RS10045at 2487.048 kb on + strand, within ABZR88_RS10045at 2487.049 kb on - strand, within ABZR88_RS10045at 2487.094 kb on + strand, within ABZR88_RS10045at 2487.103 kb on + strand, within ABZR88_RS10045at 2487.194 kb on + strand, within ABZR88_RS10045at 2487.222 kb on + strand, within ABZR88_RS10045at 2487.225 kb on + strand, within ABZR88_RS10045at 2487.228 kb on + strand, within ABZR88_RS10045at 2487.306 kb on - strand, within ABZR88_RS10045at 2487.321 kb on - strandat 2487.332 kb on + strandat 2487.333 kb on - strandat 2487.438 kb on - strandat 2487.462 kb on + strandat 2487.651 kb on + strandat 2487.703 kb on + strandat 2487.846 kb on + strandat 2487.970 kb on - strand, within ABZR88_RS10050at 2488.030 kb on + strand, within ABZR88_RS10050at 2488.030 kb on + strand, within ABZR88_RS10050at 2488.049 kb on - strand, within ABZR88_RS10050at 2488.226 kb on + strand, within ABZR88_RS10050at 2488.227 kb on - strand, within ABZR88_RS10050at 2488.244 kb on + strand, within ABZR88_RS10050at 2488.285 kb on + strand, within ABZR88_RS10050at 2488.405 kb on - strand, within ABZR88_RS10050at 2488.405 kb on - strand, within ABZR88_RS10050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
remove
2,485,619 - ABZR88_RS10040 0.77 +0.8
2,485,718 + ABZR88_RS10040 0.81 -0.4
2,485,774 + ABZR88_RS10040 0.83 +0.0
2,485,983 - +1.3
2,486,073 - -0.8
2,486,115 + -0.4
2,486,189 + -1.6
2,486,501 - -0.2
2,486,795 - ABZR88_RS10045 0.31 +0.4
2,486,815 + ABZR88_RS10045 0.33 +1.2
2,486,845 + ABZR88_RS10045 0.36 -0.6
2,486,846 - ABZR88_RS10045 0.36 -0.0
2,486,850 + ABZR88_RS10045 0.37 +0.2
2,486,880 + ABZR88_RS10045 0.40 -2.3
2,487,048 + ABZR88_RS10045 0.59 -3.2
2,487,049 - ABZR88_RS10045 0.59 +3.0
2,487,094 + ABZR88_RS10045 0.64 -0.2
2,487,103 + ABZR88_RS10045 0.65 -0.0
2,487,194 + ABZR88_RS10045 0.76 +0.2
2,487,222 + ABZR88_RS10045 0.79 -2.6
2,487,225 + ABZR88_RS10045 0.79 -0.6
2,487,228 + ABZR88_RS10045 0.80 +0.5
2,487,306 - ABZR88_RS10045 0.88 +0.5
2,487,321 - +0.2
2,487,332 + -1.0
2,487,333 - -0.1
2,487,438 - +0.6
2,487,462 + +0.0
2,487,651 + -0.2
2,487,703 + +0.6
2,487,846 + +0.1
2,487,970 - ABZR88_RS10050 0.19 -1.0
2,488,030 + ABZR88_RS10050 0.23 +0.1
2,488,030 + ABZR88_RS10050 0.23 +0.0
2,488,049 - ABZR88_RS10050 0.25 -0.4
2,488,226 + ABZR88_RS10050 0.39 -0.7
2,488,227 - ABZR88_RS10050 0.39 -0.7
2,488,244 + ABZR88_RS10050 0.40 -0.7
2,488,285 + ABZR88_RS10050 0.43 -2.3
2,488,405 - ABZR88_RS10050 0.53 -0.1
2,488,405 - ABZR88_RS10050 0.53 +0.2

Or see this region's nucleotide sequence