Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS10040 and ABZR88_RS10045 are separated by 365 nucleotides ABZR88_RS10045 and ABZR88_RS10050 are separated by 321 nucleotides
ABZR88_RS10040: ABZR88_RS10040 - family 20 glycosylhydrolase, at 2,483,841 to 2,486,156
_RS10040
ABZR88_RS10045: ABZR88_RS10045 - hypothetical protein, at 2,486,522 to 2,487,409
_RS10045
ABZR88_RS10050: ABZR88_RS10050 - sorbosone dehydrogenase family protein, at 2,487,731 to 2,489,011
_RS10050
Position (kb)
2486
2487
2488 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2485.619 kb on - strand, within ABZR88_RS10040 at 2485.718 kb on + strand, within ABZR88_RS10040 at 2485.774 kb on + strand, within ABZR88_RS10040 at 2485.983 kb on - strand at 2486.073 kb on - strand at 2486.115 kb on + strand at 2486.189 kb on + strand at 2486.501 kb on - strand at 2486.795 kb on - strand, within ABZR88_RS10045 at 2486.815 kb on + strand, within ABZR88_RS10045 at 2486.845 kb on + strand, within ABZR88_RS10045 at 2486.846 kb on - strand, within ABZR88_RS10045 at 2486.850 kb on + strand, within ABZR88_RS10045 at 2486.880 kb on + strand, within ABZR88_RS10045 at 2487.048 kb on + strand, within ABZR88_RS10045 at 2487.049 kb on - strand, within ABZR88_RS10045 at 2487.094 kb on + strand, within ABZR88_RS10045 at 2487.103 kb on + strand, within ABZR88_RS10045 at 2487.194 kb on + strand, within ABZR88_RS10045 at 2487.222 kb on + strand, within ABZR88_RS10045 at 2487.225 kb on + strand, within ABZR88_RS10045 at 2487.228 kb on + strand, within ABZR88_RS10045 at 2487.306 kb on - strand, within ABZR88_RS10045 at 2487.321 kb on - strand at 2487.332 kb on + strand at 2487.333 kb on - strand at 2487.438 kb on - strand at 2487.462 kb on + strand at 2487.651 kb on + strand at 2487.703 kb on + strand at 2487.846 kb on + strand at 2487.970 kb on - strand, within ABZR88_RS10050 at 2488.030 kb on + strand, within ABZR88_RS10050 at 2488.030 kb on + strand, within ABZR88_RS10050 at 2488.049 kb on - strand, within ABZR88_RS10050 at 2488.226 kb on + strand, within ABZR88_RS10050 at 2488.227 kb on - strand, within ABZR88_RS10050 at 2488.244 kb on + strand, within ABZR88_RS10050 at 2488.285 kb on + strand, within ABZR88_RS10050 at 2488.405 kb on - strand, within ABZR88_RS10050 at 2488.405 kb on - strand, within ABZR88_RS10050
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 2,485,619 - ABZR88_RS10040 0.77 +0.8 2,485,718 + ABZR88_RS10040 0.81 -0.4 2,485,774 + ABZR88_RS10040 0.83 +0.0 2,485,983 - +1.3 2,486,073 - -0.8 2,486,115 + -0.4 2,486,189 + -1.6 2,486,501 - -0.2 2,486,795 - ABZR88_RS10045 0.31 +0.4 2,486,815 + ABZR88_RS10045 0.33 +1.2 2,486,845 + ABZR88_RS10045 0.36 -0.6 2,486,846 - ABZR88_RS10045 0.36 -0.0 2,486,850 + ABZR88_RS10045 0.37 +0.2 2,486,880 + ABZR88_RS10045 0.40 -2.3 2,487,048 + ABZR88_RS10045 0.59 -3.2 2,487,049 - ABZR88_RS10045 0.59 +3.0 2,487,094 + ABZR88_RS10045 0.64 -0.2 2,487,103 + ABZR88_RS10045 0.65 -0.0 2,487,194 + ABZR88_RS10045 0.76 +0.2 2,487,222 + ABZR88_RS10045 0.79 -2.6 2,487,225 + ABZR88_RS10045 0.79 -0.6 2,487,228 + ABZR88_RS10045 0.80 +0.5 2,487,306 - ABZR88_RS10045 0.88 +0.5 2,487,321 - +0.2 2,487,332 + -1.0 2,487,333 - -0.1 2,487,438 - +0.6 2,487,462 + +0.0 2,487,651 + -0.2 2,487,703 + +0.6 2,487,846 + +0.1 2,487,970 - ABZR88_RS10050 0.19 -1.0 2,488,030 + ABZR88_RS10050 0.23 +0.1 2,488,030 + ABZR88_RS10050 0.23 +0.0 2,488,049 - ABZR88_RS10050 0.25 -0.4 2,488,226 + ABZR88_RS10050 0.39 -0.7 2,488,227 - ABZR88_RS10050 0.39 -0.7 2,488,244 + ABZR88_RS10050 0.40 -0.7 2,488,285 + ABZR88_RS10050 0.43 -2.3 2,488,405 - ABZR88_RS10050 0.53 -0.1 2,488,405 - ABZR88_RS10050 0.53 +0.2
Or see this region's nucleotide sequence