Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01890 and ABZR88_RS01895 are separated by 30 nucleotides ABZR88_RS01895 and ABZR88_RS01900 are separated by 155 nucleotides ABZR88_RS01900 and ABZR88_RS01905 are separated by 304 nucleotides ABZR88_RS01905 and ABZR88_RS01910 are separated by 62 nucleotides
ABZR88_RS01890: ABZR88_RS01890 - ribonucleoside-diphosphate reductase small subunit, at 429,276 to 430,250
_RS01890
ABZR88_RS01895: ABZR88_RS01895 - four helix bundle protein, at 430,281 to 430,661
_RS01895
ABZR88_RS01900: ABZR88_RS01900 - ribonucleoside-diphosphate reductase subunit alpha, at 430,817 to 433,195
_RS01900
ABZR88_RS01905: ABZR88_RS01905 - cysteine-rich CWC family protein, at 433,500 to 433,712
_RS01905
ABZR88_RS01910: ABZR88_RS01910 - hypothetical protein, at 433,775 to 434,557
_RS01910
Position (kb) 430
431
432
433
434 Strain fitness (log2 ratio) -2
-1
0
1
2 at 430.320 kb on - strand, within ABZR88_RS01895 at 430.320 kb on - strand, within ABZR88_RS01895 at 430.350 kb on + strand, within ABZR88_RS01895 at 430.437 kb on - strand, within ABZR88_RS01895 at 430.517 kb on - strand, within ABZR88_RS01895 at 430.551 kb on + strand, within ABZR88_RS01895 at 430.624 kb on + strand at 430.682 kb on - strand at 430.765 kb on + strand at 430.766 kb on - strand at 433.562 kb on + strand, within ABZR88_RS01905 at 433.563 kb on - strand, within ABZR88_RS01905 at 433.627 kb on - strand, within ABZR88_RS01905 at 433.689 kb on + strand, within ABZR88_RS01905 at 433.749 kb on + strand at 433.750 kb on - strand at 433.890 kb on - strand, within ABZR88_RS01910 at 434.059 kb on + strand, within ABZR88_RS01910 at 434.098 kb on + strand, within ABZR88_RS01910 at 434.172 kb on + strand, within ABZR88_RS01910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 430,320 - ABZR88_RS01895 0.10 +0.1 430,320 - ABZR88_RS01895 0.10 +0.7 430,350 + ABZR88_RS01895 0.18 -0.2 430,437 - ABZR88_RS01895 0.41 -0.6 430,517 - ABZR88_RS01895 0.62 +0.2 430,551 + ABZR88_RS01895 0.71 +2.0 430,624 + -1.1 430,682 - -1.8 430,765 + -0.6 430,766 - -0.5 433,562 + ABZR88_RS01905 0.29 +0.1 433,563 - ABZR88_RS01905 0.30 +0.4 433,627 - ABZR88_RS01905 0.60 -0.2 433,689 + ABZR88_RS01905 0.89 +0.1 433,749 + +0.2 433,750 - +0.3 433,890 - ABZR88_RS01910 0.15 -0.7 434,059 + ABZR88_RS01910 0.36 -1.1 434,098 + ABZR88_RS01910 0.41 +0.0 434,172 + ABZR88_RS01910 0.51 -1.1
Or see this region's nucleotide sequence