Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS22355 and ABZR88_RS22360 are separated by 320 nucleotides ABZR88_RS22360 and ABZR88_RS22365 are separated by 103 nucleotides ABZR88_RS22365 and ABZR88_RS22370 are separated by 13 nucleotides
ABZR88_RS22355: ABZR88_RS22355 - phosphatidate cytidylyltransferase, at 5,353,792 to 5,354,631
_RS22355
ABZR88_RS22360: ABZR88_RS22360 - iron-sulfur cluster assembly accessory protein, at 5,354,952 to 5,355,305
_RS22360
ABZR88_RS22365: ABZR88_RS22365 - hypothetical protein, at 5,355,409 to 5,355,939
_RS22365
ABZR88_RS22370: ABZR88_RS22370 - methylmalonyl-CoA mutase, at 5,355,953 to 5,357,503
_RS22370
Position (kb) 5354
5355
5356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5354.641 kb on + strand at 5354.701 kb on - strand at 5354.701 kb on - strand at 5354.771 kb on - strand at 5354.822 kb on - strand at 5354.901 kb on + strand at 5354.984 kb on + strand at 5355.064 kb on + strand, within ABZR88_RS22360 at 5355.087 kb on - strand, within ABZR88_RS22360 at 5355.150 kb on + strand, within ABZR88_RS22360 at 5355.189 kb on + strand, within ABZR88_RS22360 at 5355.396 kb on - strand at 5355.428 kb on + strand at 5355.428 kb on + strand at 5355.445 kb on + strand at 5355.658 kb on - strand, within ABZR88_RS22365 at 5355.658 kb on - strand, within ABZR88_RS22365 at 5355.684 kb on + strand, within ABZR88_RS22365 at 5355.687 kb on - strand, within ABZR88_RS22365 at 5355.933 kb on - strand at 5356.076 kb on - strand at 5356.076 kb on - strand at 5356.080 kb on - strand at 5356.273 kb on - strand, within ABZR88_RS22370
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 5,354,641 + -1.2 5,354,701 - +1.4 5,354,701 - +0.6 5,354,771 - -1.0 5,354,822 - -1.0 5,354,901 + -0.6 5,354,984 + -0.6 5,355,064 + ABZR88_RS22360 0.32 +0.6 5,355,087 - ABZR88_RS22360 0.38 -3.3 5,355,150 + ABZR88_RS22360 0.56 -0.4 5,355,189 + ABZR88_RS22360 0.67 -1.4 5,355,396 - +0.1 5,355,428 + -1.4 5,355,428 + +0.5 5,355,445 + +1.9 5,355,658 - ABZR88_RS22365 0.47 -0.3 5,355,658 - ABZR88_RS22365 0.47 -0.1 5,355,684 + ABZR88_RS22365 0.52 +1.0 5,355,687 - ABZR88_RS22365 0.52 -0.6 5,355,933 - +0.4 5,356,076 - -0.8 5,356,076 - +0.8 5,356,080 - +0.6 5,356,273 - ABZR88_RS22370 0.21 +0.4
Or see this region's nucleotide sequence