Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21780 and ABZR88_RS21785 overlap by 4 nucleotides ABZR88_RS21785 and ABZR88_RS21790 are separated by 16 nucleotides ABZR88_RS21790 and ABZR88_RS21795 are separated by 118 nucleotides
ABZR88_RS21780: ABZR88_RS21780 - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 5,228,099 to 5,228,995
_RS21780
ABZR88_RS21785: ABZR88_RS21785 - ATP-binding cassette domain-containing protein, at 5,228,992 to 5,229,840
_RS21785
ABZR88_RS21790: ABZR88_RS21790 - phosphonate C-P lyase system protein PhnL, at 5,229,857 to 5,230,570
_RS21790
ABZR88_RS21795: ABZR88_RS21795 - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 5,230,689 to 5,231,891
_RS21795
Position (kb) 5229
5230
5231 Strain fitness (log2 ratio) -2
-1
0
1 at 5229.000 kb on + strand at 5229.123 kb on + strand, within ABZR88_RS21785 at 5229.123 kb on + strand, within ABZR88_RS21785 at 5229.129 kb on - strand, within ABZR88_RS21785 at 5229.129 kb on - strand, within ABZR88_RS21785 at 5229.227 kb on - strand, within ABZR88_RS21785 at 5229.326 kb on + strand, within ABZR88_RS21785 at 5229.626 kb on + strand, within ABZR88_RS21785 at 5229.762 kb on - strand at 5229.809 kb on - strand at 5230.432 kb on + strand, within ABZR88_RS21790 at 5230.988 kb on + strand, within ABZR88_RS21795 at 5231.016 kb on + strand, within ABZR88_RS21795 at 5231.017 kb on - strand, within ABZR88_RS21795 at 5231.017 kb on - strand, within ABZR88_RS21795 at 5231.049 kb on + strand, within ABZR88_RS21795 at 5231.216 kb on + strand, within ABZR88_RS21795 at 5231.532 kb on - strand, within ABZR88_RS21795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 5,229,000 + -0.2 5,229,123 + ABZR88_RS21785 0.15 -1.8 5,229,123 + ABZR88_RS21785 0.15 +0.8 5,229,129 - ABZR88_RS21785 0.16 -1.0 5,229,129 - ABZR88_RS21785 0.16 +0.2 5,229,227 - ABZR88_RS21785 0.28 +0.3 5,229,326 + ABZR88_RS21785 0.39 -0.9 5,229,626 + ABZR88_RS21785 0.75 -1.2 5,229,762 - -0.2 5,229,809 - -0.6 5,230,432 + ABZR88_RS21790 0.81 -1.7 5,230,988 + ABZR88_RS21795 0.25 +0.1 5,231,016 + ABZR88_RS21795 0.27 +0.1 5,231,017 - ABZR88_RS21795 0.27 -0.4 5,231,017 - ABZR88_RS21795 0.27 +0.1 5,231,049 + ABZR88_RS21795 0.30 -1.4 5,231,216 + ABZR88_RS21795 0.44 +0.4 5,231,532 - ABZR88_RS21795 0.70 -1.4
Or see this region's nucleotide sequence