Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21700 and ABZR88_RS21705 are separated by 462 nucleotides ABZR88_RS21705 and ABZR88_RS21710 are separated by 68 nucleotides ABZR88_RS21710 and ABZR88_RS21715 overlap by 4 nucleotides ABZR88_RS21715 and ABZR88_RS21720 are separated by 104 nucleotides
ABZR88_RS21700: ABZR88_RS21700 - Lrp/AsnC ligand binding domain-containing protein, at 5,211,498 to 5,211,974
_RS21700
ABZR88_RS21705: ABZR88_RS21705 - response regulator, at 5,212,437 to 5,212,817
_RS21705
ABZR88_RS21710: ABZR88_RS21710 - DUF983 domain-containing protein, at 5,212,886 to 5,213,317
_RS21710
ABZR88_RS21715: ABZR88_RS21715 - AraC family transcriptional regulator, at 5,213,314 to 5,214,198
_RS21715
ABZR88_RS21720: ABZR88_RS21720 - glycoside hydrolase family 28 protein, at 5,214,303 to 5,215,715
_RS21720
Position (kb) 5212
5213
5214 Strain fitness (log2 ratio) -1
0
1 at 5212.254 kb on - strand at 5212.378 kb on + strand at 5212.378 kb on + strand at 5212.434 kb on + strand at 5212.673 kb on + strand, within ABZR88_RS21705 at 5212.711 kb on + strand, within ABZR88_RS21705 at 5212.764 kb on + strand, within ABZR88_RS21705 at 5212.824 kb on - strand at 5212.844 kb on - strand at 5212.850 kb on + strand at 5213.056 kb on - strand, within ABZR88_RS21710 at 5213.069 kb on + strand, within ABZR88_RS21710 at 5213.267 kb on + strand, within ABZR88_RS21710 at 5213.599 kb on - strand, within ABZR88_RS21715 at 5213.793 kb on + strand, within ABZR88_RS21715 at 5213.820 kb on + strand, within ABZR88_RS21715 at 5213.821 kb on - strand, within ABZR88_RS21715 at 5213.824 kb on + strand, within ABZR88_RS21715 at 5214.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 5,212,254 - +0.4 5,212,378 + -0.1 5,212,378 + +1.4 5,212,434 + +1.4 5,212,673 + ABZR88_RS21705 0.62 -0.1 5,212,711 + ABZR88_RS21705 0.72 -0.3 5,212,764 + ABZR88_RS21705 0.86 -0.1 5,212,824 - +0.7 5,212,844 - +1.4 5,212,850 + +0.5 5,213,056 - ABZR88_RS21710 0.39 -1.1 5,213,069 + ABZR88_RS21710 0.42 -0.1 5,213,267 + ABZR88_RS21710 0.88 -0.6 5,213,599 - ABZR88_RS21715 0.32 +0.1 5,213,793 + ABZR88_RS21715 0.54 +1.4 5,213,820 + ABZR88_RS21715 0.57 -1.2 5,213,821 - ABZR88_RS21715 0.57 -0.6 5,213,824 + ABZR88_RS21715 0.58 +0.1 5,214,168 - +1.6
Or see this region's nucleotide sequence