Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20980 and ABZR88_RS20985 are separated by 14 nucleotides ABZR88_RS20985 and ABZR88_RS20990 overlap by 17 nucleotides ABZR88_RS20990 and ABZR88_RS20995 are separated by 202 nucleotides
ABZR88_RS20980: ABZR88_RS20980 - HlyD family secretion protein, at 5,073,760 to 5,074,821
_RS20980
ABZR88_RS20985: ABZR88_RS20985 - TolC family protein, at 5,074,836 to 5,076,194
_RS20985
ABZR88_RS20990: ABZR88_RS20990 - TetR/AcrR family transcriptional regulator, at 5,076,178 to 5,076,825
_RS20990
ABZR88_RS20995: ABZR88_RS20995 - PIG-L family deacetylase, at 5,077,028 to 5,079,505
_RS20995
Position (kb)
5074
5075
5076
5077 Strain fitness (log2 ratio)
-2
-1
0
1 at 5073.987 kb on + strand, within ABZR88_RS20980 at 5074.033 kb on - strand, within ABZR88_RS20980 at 5074.049 kb on + strand, within ABZR88_RS20980 at 5074.295 kb on + strand, within ABZR88_RS20980 at 5074.296 kb on - strand, within ABZR88_RS20980 at 5074.588 kb on + strand, within ABZR88_RS20980 at 5074.589 kb on - strand, within ABZR88_RS20980 at 5074.618 kb on - strand, within ABZR88_RS20980 at 5074.703 kb on + strand, within ABZR88_RS20980 at 5074.744 kb on + strand at 5074.827 kb on + strand at 5074.872 kb on - strand at 5074.986 kb on - strand, within ABZR88_RS20985 at 5075.066 kb on - strand, within ABZR88_RS20985 at 5075.150 kb on + strand, within ABZR88_RS20985 at 5075.315 kb on + strand, within ABZR88_RS20985 at 5075.406 kb on - strand, within ABZR88_RS20985 at 5075.438 kb on + strand, within ABZR88_RS20985 at 5075.502 kb on - strand, within ABZR88_RS20985 at 5075.591 kb on + strand, within ABZR88_RS20985 at 5075.723 kb on - strand, within ABZR88_RS20985 at 5075.906 kb on + strand, within ABZR88_RS20985 at 5076.054 kb on - strand, within ABZR88_RS20985 at 5076.177 kb on - strand at 5076.180 kb on - strand at 5076.282 kb on + strand, within ABZR88_RS20990 at 5076.511 kb on + strand, within ABZR88_RS20990 at 5076.689 kb on + strand, within ABZR88_RS20990 at 5076.828 kb on + strand at 5077.160 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 5,073,987 + ABZR88_RS20980 0.21 -0.3 5,074,033 - ABZR88_RS20980 0.26 -0.8 5,074,049 + ABZR88_RS20980 0.27 -0.3 5,074,295 + ABZR88_RS20980 0.50 -0.6 5,074,296 - ABZR88_RS20980 0.50 -1.1 5,074,588 + ABZR88_RS20980 0.78 -0.6 5,074,589 - ABZR88_RS20980 0.78 -1.1 5,074,618 - ABZR88_RS20980 0.81 -1.7 5,074,703 + ABZR88_RS20980 0.89 +0.7 5,074,744 + -2.0 5,074,827 + -1.1 5,074,872 - -1.1 5,074,986 - ABZR88_RS20985 0.11 -0.2 5,075,066 - ABZR88_RS20985 0.17 -0.6 5,075,150 + ABZR88_RS20985 0.23 -2.2 5,075,315 + ABZR88_RS20985 0.35 -2.0 5,075,406 - ABZR88_RS20985 0.42 -2.0 5,075,438 + ABZR88_RS20985 0.44 -1.0 5,075,502 - ABZR88_RS20985 0.49 -0.8 5,075,591 + ABZR88_RS20985 0.56 -0.6 5,075,723 - ABZR88_RS20985 0.65 +0.8 5,075,906 + ABZR88_RS20985 0.79 +0.2 5,076,054 - ABZR88_RS20985 0.90 -1.2 5,076,177 - -1.0 5,076,180 - -2.1 5,076,282 + ABZR88_RS20990 0.16 +0.1 5,076,511 + ABZR88_RS20990 0.51 +0.6 5,076,689 + ABZR88_RS20990 0.79 +0.7 5,076,828 + -1.4 5,077,160 + +0.6
Or see this region's nucleotide sequence