Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS20985

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS20980 and ABZR88_RS20985 are separated by 14 nucleotidesABZR88_RS20985 and ABZR88_RS20990 overlap by 17 nucleotidesABZR88_RS20990 and ABZR88_RS20995 are separated by 202 nucleotides ABZR88_RS20980: ABZR88_RS20980 - HlyD family secretion protein, at 5,073,760 to 5,074,821 _RS20980 ABZR88_RS20985: ABZR88_RS20985 - TolC family protein, at 5,074,836 to 5,076,194 _RS20985 ABZR88_RS20990: ABZR88_RS20990 - TetR/AcrR family transcriptional regulator, at 5,076,178 to 5,076,825 _RS20990 ABZR88_RS20995: ABZR88_RS20995 - PIG-L family deacetylase, at 5,077,028 to 5,079,505 _RS20995 Position (kb) 5074 5075 5076 5077Strain fitness (log2 ratio) -2 -1 0 1at 5073.987 kb on + strand, within ABZR88_RS20980at 5074.033 kb on - strand, within ABZR88_RS20980at 5074.049 kb on + strand, within ABZR88_RS20980at 5074.295 kb on + strand, within ABZR88_RS20980at 5074.296 kb on - strand, within ABZR88_RS20980at 5074.588 kb on + strand, within ABZR88_RS20980at 5074.589 kb on - strand, within ABZR88_RS20980at 5074.618 kb on - strand, within ABZR88_RS20980at 5074.703 kb on + strand, within ABZR88_RS20980at 5074.744 kb on + strandat 5074.827 kb on + strandat 5074.872 kb on - strandat 5074.986 kb on - strand, within ABZR88_RS20985at 5075.066 kb on - strand, within ABZR88_RS20985at 5075.150 kb on + strand, within ABZR88_RS20985at 5075.315 kb on + strand, within ABZR88_RS20985at 5075.406 kb on - strand, within ABZR88_RS20985at 5075.438 kb on + strand, within ABZR88_RS20985at 5075.502 kb on - strand, within ABZR88_RS20985at 5075.591 kb on + strand, within ABZR88_RS20985at 5075.723 kb on - strand, within ABZR88_RS20985at 5075.906 kb on + strand, within ABZR88_RS20985at 5076.054 kb on - strand, within ABZR88_RS20985at 5076.177 kb on - strandat 5076.180 kb on - strandat 5076.282 kb on + strand, within ABZR88_RS20990at 5076.511 kb on + strand, within ABZR88_RS20990at 5076.689 kb on + strand, within ABZR88_RS20990at 5076.828 kb on + strandat 5077.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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5,073,987 + ABZR88_RS20980 0.21 -0.3
5,074,033 - ABZR88_RS20980 0.26 -0.8
5,074,049 + ABZR88_RS20980 0.27 -0.3
5,074,295 + ABZR88_RS20980 0.50 -0.6
5,074,296 - ABZR88_RS20980 0.50 -1.1
5,074,588 + ABZR88_RS20980 0.78 -0.6
5,074,589 - ABZR88_RS20980 0.78 -1.1
5,074,618 - ABZR88_RS20980 0.81 -1.7
5,074,703 + ABZR88_RS20980 0.89 +0.7
5,074,744 + -2.0
5,074,827 + -1.1
5,074,872 - -1.1
5,074,986 - ABZR88_RS20985 0.11 -0.2
5,075,066 - ABZR88_RS20985 0.17 -0.6
5,075,150 + ABZR88_RS20985 0.23 -2.2
5,075,315 + ABZR88_RS20985 0.35 -2.0
5,075,406 - ABZR88_RS20985 0.42 -2.0
5,075,438 + ABZR88_RS20985 0.44 -1.0
5,075,502 - ABZR88_RS20985 0.49 -0.8
5,075,591 + ABZR88_RS20985 0.56 -0.6
5,075,723 - ABZR88_RS20985 0.65 +0.8
5,075,906 + ABZR88_RS20985 0.79 +0.2
5,076,054 - ABZR88_RS20985 0.90 -1.2
5,076,177 - -1.0
5,076,180 - -2.1
5,076,282 + ABZR88_RS20990 0.16 +0.1
5,076,511 + ABZR88_RS20990 0.51 +0.6
5,076,689 + ABZR88_RS20990 0.79 +0.7
5,076,828 + -1.4
5,077,160 + +0.6

Or see this region's nucleotide sequence