Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS20975

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS20970 and ABZR88_RS20975 are separated by 787 nucleotidesABZR88_RS20975 and ABZR88_RS20980 are separated by 5 nucleotides ABZR88_RS20970: ABZR88_RS20970 - carboxymuconolactone decarboxylase family protein, at 5,070,841 to 5,071,425 _RS20970 ABZR88_RS20975: ABZR88_RS20975 - DHA2 family efflux MFS transporter permease subunit, at 5,072,213 to 5,073,754 _RS20975 ABZR88_RS20980: ABZR88_RS20980 - HlyD family secretion protein, at 5,073,760 to 5,074,821 _RS20980 Position (kb) 5072 5073 5074Strain fitness (log2 ratio) -2 -1 0 1 2at 5071.743 kb on + strandat 5071.745 kb on + strandat 5071.745 kb on + strandat 5071.745 kb on + strandat 5072.129 kb on - strandat 5072.178 kb on + strandat 5072.316 kb on + strandat 5072.422 kb on - strand, within ABZR88_RS20975at 5072.639 kb on + strand, within ABZR88_RS20975at 5072.660 kb on + strand, within ABZR88_RS20975at 5072.821 kb on + strand, within ABZR88_RS20975at 5073.011 kb on + strand, within ABZR88_RS20975at 5073.073 kb on - strand, within ABZR88_RS20975at 5073.073 kb on - strand, within ABZR88_RS20975at 5073.111 kb on - strand, within ABZR88_RS20975at 5073.512 kb on - strand, within ABZR88_RS20975at 5073.579 kb on - strand, within ABZR88_RS20975at 5073.647 kb on + strandat 5073.768 kb on + strandat 5073.987 kb on + strand, within ABZR88_RS20980at 5074.033 kb on - strand, within ABZR88_RS20980at 5074.049 kb on + strand, within ABZR88_RS20980at 5074.295 kb on + strand, within ABZR88_RS20980at 5074.296 kb on - strand, within ABZR88_RS20980at 5074.588 kb on + strand, within ABZR88_RS20980at 5074.589 kb on - strand, within ABZR88_RS20980at 5074.618 kb on - strand, within ABZR88_RS20980at 5074.703 kb on + strand, within ABZR88_RS20980at 5074.744 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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5,071,743 + -0.2
5,071,745 + -0.2
5,071,745 + +2.2
5,071,745 + -0.4
5,072,129 - +1.0
5,072,178 + -0.9
5,072,316 + -0.9
5,072,422 - ABZR88_RS20975 0.14 -0.6
5,072,639 + ABZR88_RS20975 0.28 -0.8
5,072,660 + ABZR88_RS20975 0.29 -1.2
5,072,821 + ABZR88_RS20975 0.39 +1.4
5,073,011 + ABZR88_RS20975 0.52 -0.1
5,073,073 - ABZR88_RS20975 0.56 -1.2
5,073,073 - ABZR88_RS20975 0.56 -0.2
5,073,111 - ABZR88_RS20975 0.58 -0.2
5,073,512 - ABZR88_RS20975 0.84 -1.0
5,073,579 - ABZR88_RS20975 0.89 +0.0
5,073,647 + -1.2
5,073,768 + -0.1
5,073,987 + ABZR88_RS20980 0.21 -0.3
5,074,033 - ABZR88_RS20980 0.26 -0.8
5,074,049 + ABZR88_RS20980 0.27 -0.3
5,074,295 + ABZR88_RS20980 0.50 -0.6
5,074,296 - ABZR88_RS20980 0.50 -1.1
5,074,588 + ABZR88_RS20980 0.78 -0.6
5,074,589 - ABZR88_RS20980 0.78 -1.1
5,074,618 - ABZR88_RS20980 0.81 -1.7
5,074,703 + ABZR88_RS20980 0.89 +0.7
5,074,744 + -2.0

Or see this region's nucleotide sequence