Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20615 and ABZR88_RS20620 are separated by 159 nucleotides ABZR88_RS20620 and ABZR88_RS20625 overlap by 11 nucleotides ABZR88_RS20625 and ABZR88_RS20630 are separated by 84 nucleotides ABZR88_RS20630 and ABZR88_RS20635 are separated by 12 nucleotides
ABZR88_RS20615: ABZR88_RS20615 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 4,989,848 to 4,991,710
_RS20615
ABZR88_RS20620: ABZR88_RS20620 - Ig-like domain-containing protein, at 4,991,870 to 4,993,465
_RS20620
ABZR88_RS20625: ABZR88_RS20625 - gamma carbonic anhydrase family protein, at 4,993,455 to 4,993,967
_RS20625
ABZR88_RS20630: ABZR88_RS20630 - tRNA-Gly, at 4,994,052 to 4,994,124
_RS20630
ABZR88_RS20635: ABZR88_RS20635 - hypothetical protein, at 4,994,137 to 4,994,571
_RS20635
Position (kb)
4991
4992
4993
4994 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4992.153 kb on - strand, within ABZR88_RS20620 at 4992.218 kb on + strand, within ABZR88_RS20620 at 4992.307 kb on - strand, within ABZR88_RS20620 at 4992.625 kb on + strand, within ABZR88_RS20620 at 4992.652 kb on + strand, within ABZR88_RS20620 at 4992.656 kb on - strand, within ABZR88_RS20620 at 4992.694 kb on - strand, within ABZR88_RS20620 at 4992.694 kb on - strand, within ABZR88_RS20620 at 4992.800 kb on + strand, within ABZR88_RS20620 at 4992.839 kb on - strand, within ABZR88_RS20620 at 4993.010 kb on - strand, within ABZR88_RS20620 at 4993.010 kb on - strand, within ABZR88_RS20620 at 4993.155 kb on + strand, within ABZR88_RS20620 at 4993.267 kb on - strand, within ABZR88_RS20620 at 4993.310 kb on + strand at 4993.310 kb on + strand at 4993.311 kb on - strand at 4993.396 kb on - strand at 4993.482 kb on + strand at 4993.710 kb on - strand, within ABZR88_RS20625 at 4993.716 kb on - strand, within ABZR88_RS20625 at 4993.763 kb on - strand, within ABZR88_RS20625 at 4993.824 kb on - strand, within ABZR88_RS20625 at 4993.854 kb on + strand, within ABZR88_RS20625 at 4993.940 kb on + strand at 4994.037 kb on + strand at 4994.037 kb on + strand at 4994.042 kb on + strand at 4994.216 kb on - strand, within ABZR88_RS20635 at 4994.282 kb on + strand, within ABZR88_RS20635 at 4994.447 kb on - strand, within ABZR88_RS20635 at 4994.465 kb on + strand, within ABZR88_RS20635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,992,153 - ABZR88_RS20620 0.18 -0.2 4,992,218 + ABZR88_RS20620 0.22 -1.8 4,992,307 - ABZR88_RS20620 0.27 -1.4 4,992,625 + ABZR88_RS20620 0.47 -2.2 4,992,652 + ABZR88_RS20620 0.49 +0.4 4,992,656 - ABZR88_RS20620 0.49 +1.4 4,992,694 - ABZR88_RS20620 0.52 +0.4 4,992,694 - ABZR88_RS20620 0.52 -1.0 4,992,800 + ABZR88_RS20620 0.58 -1.8 4,992,839 - ABZR88_RS20620 0.61 -2.6 4,993,010 - ABZR88_RS20620 0.71 -1.2 4,993,010 - ABZR88_RS20620 0.71 -1.6 4,993,155 + ABZR88_RS20620 0.81 -2.8 4,993,267 - ABZR88_RS20620 0.88 -1.2 4,993,310 + -2.0 4,993,310 + -1.4 4,993,311 - -0.3 4,993,396 - -1.8 4,993,482 + +2.4 4,993,710 - ABZR88_RS20625 0.50 -0.3 4,993,716 - ABZR88_RS20625 0.51 -0.3 4,993,763 - ABZR88_RS20625 0.60 +0.3 4,993,824 - ABZR88_RS20625 0.72 -1.0 4,993,854 + ABZR88_RS20625 0.78 +0.0 4,993,940 + -0.1 4,994,037 + -0.2 4,994,037 + +0.1 4,994,042 + -0.8 4,994,216 - ABZR88_RS20635 0.18 +0.8 4,994,282 + ABZR88_RS20635 0.33 +1.6 4,994,447 - ABZR88_RS20635 0.71 -0.8 4,994,465 + ABZR88_RS20635 0.75 -1.4
Or see this region's nucleotide sequence