Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS20620

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS20615 and ABZR88_RS20620 are separated by 159 nucleotidesABZR88_RS20620 and ABZR88_RS20625 overlap by 11 nucleotidesABZR88_RS20625 and ABZR88_RS20630 are separated by 84 nucleotidesABZR88_RS20630 and ABZR88_RS20635 are separated by 12 nucleotides ABZR88_RS20615: ABZR88_RS20615 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 4,989,848 to 4,991,710 _RS20615 ABZR88_RS20620: ABZR88_RS20620 - Ig-like domain-containing protein, at 4,991,870 to 4,993,465 _RS20620 ABZR88_RS20625: ABZR88_RS20625 - gamma carbonic anhydrase family protein, at 4,993,455 to 4,993,967 _RS20625 ABZR88_RS20630: ABZR88_RS20630 - tRNA-Gly, at 4,994,052 to 4,994,124 _RS20630 ABZR88_RS20635: ABZR88_RS20635 - hypothetical protein, at 4,994,137 to 4,994,571 _RS20635 Position (kb) 4991 4992 4993 4994Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4992.153 kb on - strand, within ABZR88_RS20620at 4992.218 kb on + strand, within ABZR88_RS20620at 4992.307 kb on - strand, within ABZR88_RS20620at 4992.625 kb on + strand, within ABZR88_RS20620at 4992.652 kb on + strand, within ABZR88_RS20620at 4992.656 kb on - strand, within ABZR88_RS20620at 4992.694 kb on - strand, within ABZR88_RS20620at 4992.694 kb on - strand, within ABZR88_RS20620at 4992.800 kb on + strand, within ABZR88_RS20620at 4992.839 kb on - strand, within ABZR88_RS20620at 4993.010 kb on - strand, within ABZR88_RS20620at 4993.010 kb on - strand, within ABZR88_RS20620at 4993.155 kb on + strand, within ABZR88_RS20620at 4993.267 kb on - strand, within ABZR88_RS20620at 4993.310 kb on + strandat 4993.310 kb on + strandat 4993.311 kb on - strandat 4993.396 kb on - strandat 4993.482 kb on + strandat 4993.710 kb on - strand, within ABZR88_RS20625at 4993.716 kb on - strand, within ABZR88_RS20625at 4993.763 kb on - strand, within ABZR88_RS20625at 4993.824 kb on - strand, within ABZR88_RS20625at 4993.854 kb on + strand, within ABZR88_RS20625at 4993.940 kb on + strandat 4994.037 kb on + strandat 4994.037 kb on + strandat 4994.042 kb on + strandat 4994.216 kb on - strand, within ABZR88_RS20635at 4994.282 kb on + strand, within ABZR88_RS20635at 4994.447 kb on - strand, within ABZR88_RS20635at 4994.465 kb on + strand, within ABZR88_RS20635

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,992,153 - ABZR88_RS20620 0.18 -0.2
4,992,218 + ABZR88_RS20620 0.22 -1.8
4,992,307 - ABZR88_RS20620 0.27 -1.4
4,992,625 + ABZR88_RS20620 0.47 -2.2
4,992,652 + ABZR88_RS20620 0.49 +0.4
4,992,656 - ABZR88_RS20620 0.49 +1.4
4,992,694 - ABZR88_RS20620 0.52 +0.4
4,992,694 - ABZR88_RS20620 0.52 -1.0
4,992,800 + ABZR88_RS20620 0.58 -1.8
4,992,839 - ABZR88_RS20620 0.61 -2.6
4,993,010 - ABZR88_RS20620 0.71 -1.2
4,993,010 - ABZR88_RS20620 0.71 -1.6
4,993,155 + ABZR88_RS20620 0.81 -2.8
4,993,267 - ABZR88_RS20620 0.88 -1.2
4,993,310 + -2.0
4,993,310 + -1.4
4,993,311 - -0.3
4,993,396 - -1.8
4,993,482 + +2.4
4,993,710 - ABZR88_RS20625 0.50 -0.3
4,993,716 - ABZR88_RS20625 0.51 -0.3
4,993,763 - ABZR88_RS20625 0.60 +0.3
4,993,824 - ABZR88_RS20625 0.72 -1.0
4,993,854 + ABZR88_RS20625 0.78 +0.0
4,993,940 + -0.1
4,994,037 + -0.2
4,994,037 + +0.1
4,994,042 + -0.8
4,994,216 - ABZR88_RS20635 0.18 +0.8
4,994,282 + ABZR88_RS20635 0.33 +1.6
4,994,447 - ABZR88_RS20635 0.71 -0.8
4,994,465 + ABZR88_RS20635 0.75 -1.4

Or see this region's nucleotide sequence