Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20560 and ABZR88_RS20565 are separated by 1 nucleotides ABZR88_RS20565 and ABZR88_RS20570 overlap by 1 nucleotides ABZR88_RS20570 and ABZR88_RS20575 are separated by 57 nucleotides
ABZR88_RS20560: ABZR88_RS20560 - DUF4175 family protein, at 4,978,018 to 4,981,452
_RS20560
ABZR88_RS20565: ABZR88_RS20565 - ATP-binding protein, at 4,981,454 to 4,981,876
_RS20565
ABZR88_RS20570: ABZR88_RS20570 - rRNA maturation RNase YbeY, at 4,981,876 to 4,982,301
_RS20570
ABZR88_RS20575: ABZR88_RS20575 - glutathione peroxidase, at 4,982,359 to 4,982,874
_RS20575
Position (kb) 4981
4982 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4980.604 kb on + strand, within ABZR88_RS20560 at 4980.608 kb on + strand, within ABZR88_RS20560 at 4980.710 kb on + strand, within ABZR88_RS20560 at 4980.742 kb on - strand, within ABZR88_RS20560 at 4980.906 kb on + strand, within ABZR88_RS20560 at 4980.955 kb on - strand, within ABZR88_RS20560 at 4980.955 kb on - strand, within ABZR88_RS20560 at 4980.955 kb on - strand, within ABZR88_RS20560 at 4980.958 kb on - strand, within ABZR88_RS20560 at 4981.206 kb on - strand at 4981.224 kb on - strand at 4981.383 kb on - strand at 4981.440 kb on + strand at 4981.441 kb on - strand at 4981.524 kb on + strand, within ABZR88_RS20565 at 4981.628 kb on - strand, within ABZR88_RS20565 at 4981.628 kb on - strand, within ABZR88_RS20565 at 4982.337 kb on - strand at 4982.352 kb on + strand at 4982.353 kb on - strand at 4982.358 kb on + strand at 4982.558 kb on - strand, within ABZR88_RS20575 at 4982.558 kb on - strand, within ABZR88_RS20575 at 4982.663 kb on + strand, within ABZR88_RS20575 at 4982.664 kb on - strand, within ABZR88_RS20575 at 4982.842 kb on - strand at 4982.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,980,604 + ABZR88_RS20560 0.75 +0.4 4,980,608 + ABZR88_RS20560 0.75 +0.7 4,980,710 + ABZR88_RS20560 0.78 +0.1 4,980,742 - ABZR88_RS20560 0.79 -0.1 4,980,906 + ABZR88_RS20560 0.84 -0.2 4,980,955 - ABZR88_RS20560 0.86 +3.8 4,980,955 - ABZR88_RS20560 0.86 +0.9 4,980,955 - ABZR88_RS20560 0.86 -0.6 4,980,958 - ABZR88_RS20560 0.86 -0.2 4,981,206 - +1.0 4,981,224 - -0.7 4,981,383 - -0.1 4,981,440 + +0.4 4,981,441 - -0.2 4,981,524 + ABZR88_RS20565 0.17 +0.4 4,981,628 - ABZR88_RS20565 0.41 -2.0 4,981,628 - ABZR88_RS20565 0.41 -1.6 4,982,337 - -0.0 4,982,352 + +2.4 4,982,353 - +2.6 4,982,358 + +2.4 4,982,558 - ABZR88_RS20575 0.39 +0.0 4,982,558 - ABZR88_RS20575 0.39 +0.4 4,982,663 + ABZR88_RS20575 0.59 -0.9 4,982,664 - ABZR88_RS20575 0.59 +0.3 4,982,842 - +0.2 4,982,864 - +0.5
Or see this region's nucleotide sequence