Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20350 and ABZR88_RS20355 are separated by 129 nucleotides ABZR88_RS20355 and ABZR88_RS20360 are separated by 98 nucleotides ABZR88_RS20360 and ABZR88_RS20365 are separated by 319 nucleotides
ABZR88_RS20350: ABZR88_RS20350 - ligase-associated DNA damage response exonuclease, at 4,933,691 to 4,934,713
_RS20350
ABZR88_RS20355: ABZR88_RS20355 - DUF2752 domain-containing protein, at 4,934,843 to 4,935,181
_RS20355
ABZR88_RS20360: ABZR88_RS20360 - TM2 domain-containing protein, at 4,935,280 to 4,935,651
_RS20360
ABZR88_RS20365: ABZR88_RS20365 - isochorismatase family protein, at 4,935,971 to 4,936,540
_RS20365
Position (kb)
4934
4935
4936 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4934.020 kb on + strand, within ABZR88_RS20350 at 4934.131 kb on + strand, within ABZR88_RS20350 at 4934.171 kb on - strand, within ABZR88_RS20350 at 4934.267 kb on + strand, within ABZR88_RS20350 at 4934.333 kb on + strand, within ABZR88_RS20350 at 4934.421 kb on - strand, within ABZR88_RS20350 at 4934.536 kb on - strand, within ABZR88_RS20350 at 4934.569 kb on - strand, within ABZR88_RS20350 at 4934.622 kb on + strand at 4934.623 kb on - strand at 4934.857 kb on - strand at 4934.998 kb on + strand, within ABZR88_RS20355 at 4935.201 kb on - strand at 4935.277 kb on - strand at 4935.301 kb on + strand at 4935.302 kb on - strand at 4935.400 kb on + strand, within ABZR88_RS20360 at 4935.400 kb on + strand, within ABZR88_RS20360 at 4935.618 kb on + strand at 4935.672 kb on + strand at 4935.691 kb on + strand at 4935.692 kb on - strand at 4935.900 kb on + strand at 4935.901 kb on - strand at 4936.045 kb on + strand, within ABZR88_RS20365 at 4936.102 kb on + strand, within ABZR88_RS20365 at 4936.146 kb on - strand, within ABZR88_RS20365
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,934,020 + ABZR88_RS20350 0.32 +0.1 4,934,131 + ABZR88_RS20350 0.43 -0.1 4,934,171 - ABZR88_RS20350 0.47 +0.4 4,934,267 + ABZR88_RS20350 0.56 -0.7 4,934,333 + ABZR88_RS20350 0.63 -0.3 4,934,421 - ABZR88_RS20350 0.71 -1.8 4,934,536 - ABZR88_RS20350 0.83 +0.6 4,934,569 - ABZR88_RS20350 0.86 +1.8 4,934,622 + -1.3 4,934,623 - +0.8 4,934,857 - +0.5 4,934,998 + ABZR88_RS20355 0.46 -2.6 4,935,201 - -0.0 4,935,277 - -0.5 4,935,301 + +0.3 4,935,302 - -0.4 4,935,400 + ABZR88_RS20360 0.32 -0.7 4,935,400 + ABZR88_RS20360 0.32 +0.0 4,935,618 + +0.1 4,935,672 + +0.3 4,935,691 + -0.1 4,935,692 - -0.3 4,935,900 + -0.5 4,935,901 - +0.1 4,936,045 + ABZR88_RS20365 0.13 -0.8 4,936,102 + ABZR88_RS20365 0.23 -0.1 4,936,146 - ABZR88_RS20365 0.31 -0.9
Or see this region's nucleotide sequence