Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20245 and ABZR88_RS20250 are separated by 128 nucleotides ABZR88_RS20250 and ABZR88_RS20255 are separated by 116 nucleotides ABZR88_RS20255 and ABZR88_RS20260 are separated by 118 nucleotides
ABZR88_RS20245: ABZR88_RS20245 - low molecular weight protein-tyrosine-phosphatase, at 4,912,123 to 4,912,557
_RS20245
ABZR88_RS20250: ABZR88_RS20250 - hypothetical protein, at 4,912,686 to 4,913,366
_RS20250
ABZR88_RS20255: ABZR88_RS20255 - prephenate dehydrogenase, at 4,913,483 to 4,914,739
_RS20255
ABZR88_RS20260: ABZR88_RS20260 - ABC transporter permease, at 4,914,858 to 4,916,099
_RS20260
Position (kb)
4913
4914
4915 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4912.492 kb on - strand, within ABZR88_RS20245 at 4912.549 kb on + strand at 4912.555 kb on + strand at 4912.555 kb on + strand at 4912.556 kb on - strand at 4912.771 kb on - strand, within ABZR88_RS20250 at 4912.905 kb on + strand, within ABZR88_RS20250 at 4912.906 kb on - strand, within ABZR88_RS20250 at 4912.906 kb on - strand, within ABZR88_RS20250 at 4912.915 kb on + strand, within ABZR88_RS20250 at 4912.934 kb on - strand, within ABZR88_RS20250 at 4912.934 kb on - strand, within ABZR88_RS20250 at 4912.935 kb on + strand, within ABZR88_RS20250 at 4912.935 kb on + strand, within ABZR88_RS20250 at 4912.956 kb on - strand, within ABZR88_RS20250 at 4912.956 kb on - strand, within ABZR88_RS20250 at 4913.065 kb on - strand, within ABZR88_RS20250 at 4913.158 kb on + strand, within ABZR88_RS20250 at 4913.473 kb on + strand at 4913.474 kb on - strand at 4913.559 kb on + strand at 4913.951 kb on - strand, within ABZR88_RS20255 at 4914.018 kb on + strand, within ABZR88_RS20255 at 4914.083 kb on + strand, within ABZR88_RS20255 at 4914.407 kb on - strand, within ABZR88_RS20255 at 4914.551 kb on + strand, within ABZR88_RS20255 at 4914.664 kb on - strand at 4914.826 kb on + strand at 4914.872 kb on + strand at 4914.888 kb on - strand at 4914.950 kb on + strand at 4915.052 kb on + strand, within ABZR88_RS20260 at 4915.185 kb on - strand, within ABZR88_RS20260 at 4915.640 kb on + strand, within ABZR88_RS20260
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,912,492 - ABZR88_RS20245 0.85 +0.3 4,912,549 + +2.2 4,912,555 + -0.2 4,912,555 + -0.1 4,912,556 - +0.4 4,912,771 - ABZR88_RS20250 0.12 -0.3 4,912,905 + ABZR88_RS20250 0.32 -1.2 4,912,906 - ABZR88_RS20250 0.32 -0.4 4,912,906 - ABZR88_RS20250 0.32 -0.2 4,912,915 + ABZR88_RS20250 0.34 +0.5 4,912,934 - ABZR88_RS20250 0.36 -1.1 4,912,934 - ABZR88_RS20250 0.36 -0.8 4,912,935 + ABZR88_RS20250 0.37 +0.1 4,912,935 + ABZR88_RS20250 0.37 +0.8 4,912,956 - ABZR88_RS20250 0.40 +0.5 4,912,956 - ABZR88_RS20250 0.40 -0.2 4,913,065 - ABZR88_RS20250 0.56 -1.1 4,913,158 + ABZR88_RS20250 0.69 -0.6 4,913,473 + +1.4 4,913,474 - -0.8 4,913,559 + -1.4 4,913,951 - ABZR88_RS20255 0.37 -1.3 4,914,018 + ABZR88_RS20255 0.43 -1.4 4,914,083 + ABZR88_RS20255 0.48 -1.4 4,914,407 - ABZR88_RS20255 0.74 -0.1 4,914,551 + ABZR88_RS20255 0.85 +0.6 4,914,664 - -0.8 4,914,826 + +0.4 4,914,872 + -1.9 4,914,888 - -0.2 4,914,950 + -0.3 4,915,052 + ABZR88_RS20260 0.16 -0.3 4,915,185 - ABZR88_RS20260 0.26 -0.5 4,915,640 + ABZR88_RS20260 0.63 -0.4
Or see this region's nucleotide sequence