Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS20255

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS20245 and ABZR88_RS20250 are separated by 128 nucleotidesABZR88_RS20250 and ABZR88_RS20255 are separated by 116 nucleotidesABZR88_RS20255 and ABZR88_RS20260 are separated by 118 nucleotides ABZR88_RS20245: ABZR88_RS20245 - low molecular weight protein-tyrosine-phosphatase, at 4,912,123 to 4,912,557 _RS20245 ABZR88_RS20250: ABZR88_RS20250 - hypothetical protein, at 4,912,686 to 4,913,366 _RS20250 ABZR88_RS20255: ABZR88_RS20255 - prephenate dehydrogenase, at 4,913,483 to 4,914,739 _RS20255 ABZR88_RS20260: ABZR88_RS20260 - ABC transporter permease, at 4,914,858 to 4,916,099 _RS20260 Position (kb) 4913 4914 4915Strain fitness (log2 ratio) -2 -1 0 1 2at 4912.492 kb on - strand, within ABZR88_RS20245at 4912.549 kb on + strandat 4912.555 kb on + strandat 4912.555 kb on + strandat 4912.556 kb on - strandat 4912.771 kb on - strand, within ABZR88_RS20250at 4912.905 kb on + strand, within ABZR88_RS20250at 4912.906 kb on - strand, within ABZR88_RS20250at 4912.906 kb on - strand, within ABZR88_RS20250at 4912.915 kb on + strand, within ABZR88_RS20250at 4912.934 kb on - strand, within ABZR88_RS20250at 4912.934 kb on - strand, within ABZR88_RS20250at 4912.935 kb on + strand, within ABZR88_RS20250at 4912.935 kb on + strand, within ABZR88_RS20250at 4912.956 kb on - strand, within ABZR88_RS20250at 4912.956 kb on - strand, within ABZR88_RS20250at 4913.065 kb on - strand, within ABZR88_RS20250at 4913.158 kb on + strand, within ABZR88_RS20250at 4913.473 kb on + strandat 4913.474 kb on - strandat 4913.559 kb on + strandat 4913.951 kb on - strand, within ABZR88_RS20255at 4914.018 kb on + strand, within ABZR88_RS20255at 4914.083 kb on + strand, within ABZR88_RS20255at 4914.407 kb on - strand, within ABZR88_RS20255at 4914.551 kb on + strand, within ABZR88_RS20255at 4914.664 kb on - strandat 4914.826 kb on + strandat 4914.872 kb on + strandat 4914.888 kb on - strandat 4914.950 kb on + strandat 4915.052 kb on + strand, within ABZR88_RS20260at 4915.185 kb on - strand, within ABZR88_RS20260at 4915.640 kb on + strand, within ABZR88_RS20260

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,912,492 - ABZR88_RS20245 0.85 +0.3
4,912,549 + +2.2
4,912,555 + -0.2
4,912,555 + -0.1
4,912,556 - +0.4
4,912,771 - ABZR88_RS20250 0.12 -0.3
4,912,905 + ABZR88_RS20250 0.32 -1.2
4,912,906 - ABZR88_RS20250 0.32 -0.4
4,912,906 - ABZR88_RS20250 0.32 -0.2
4,912,915 + ABZR88_RS20250 0.34 +0.5
4,912,934 - ABZR88_RS20250 0.36 -1.1
4,912,934 - ABZR88_RS20250 0.36 -0.8
4,912,935 + ABZR88_RS20250 0.37 +0.1
4,912,935 + ABZR88_RS20250 0.37 +0.8
4,912,956 - ABZR88_RS20250 0.40 +0.5
4,912,956 - ABZR88_RS20250 0.40 -0.2
4,913,065 - ABZR88_RS20250 0.56 -1.1
4,913,158 + ABZR88_RS20250 0.69 -0.6
4,913,473 + +1.4
4,913,474 - -0.8
4,913,559 + -1.4
4,913,951 - ABZR88_RS20255 0.37 -1.3
4,914,018 + ABZR88_RS20255 0.43 -1.4
4,914,083 + ABZR88_RS20255 0.48 -1.4
4,914,407 - ABZR88_RS20255 0.74 -0.1
4,914,551 + ABZR88_RS20255 0.85 +0.6
4,914,664 - -0.8
4,914,826 + +0.4
4,914,872 + -1.9
4,914,888 - -0.2
4,914,950 + -0.3
4,915,052 + ABZR88_RS20260 0.16 -0.3
4,915,185 - ABZR88_RS20260 0.26 -0.5
4,915,640 + ABZR88_RS20260 0.63 -0.4

Or see this region's nucleotide sequence