Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS20165

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS20155 and ABZR88_RS20160 are separated by 0 nucleotidesABZR88_RS20160 and ABZR88_RS20165 are separated by 47 nucleotidesABZR88_RS20165 and ABZR88_RS20170 are separated by 54 nucleotides ABZR88_RS20155: ABZR88_RS20155 - protein-disulfide reductase DsbD N-terminal domain-containing protein, at 4,893,417 to 4,893,866 _RS20155 ABZR88_RS20160: ABZR88_RS20160 - biotin--[acetyl-CoA-carboxylase] ligase, at 4,893,867 to 4,894,643 _RS20160 ABZR88_RS20165: ABZR88_RS20165 - ribosome silencing factor, at 4,894,691 to 4,895,065 _RS20165 ABZR88_RS20170: ABZR88_RS20170 - ATP-dependent zinc metalloprotease FtsH, at 4,895,120 to 4,897,219 _RS20170 Position (kb) 4894 4895 4896Strain fitness (log2 ratio) -3 -2 -1 0 1at 4893.892 kb on - strandat 4894.651 kb on + strandat 4894.651 kb on + strandat 4894.658 kb on + strandat 4894.743 kb on + strand, within ABZR88_RS20165at 4894.798 kb on + strand, within ABZR88_RS20165at 4894.800 kb on + strand, within ABZR88_RS20165at 4895.063 kb on + strandat 4895.075 kb on + strandat 4895.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,893,892 - -0.1
4,894,651 + -2.3
4,894,651 + -3.5
4,894,658 + -2.6
4,894,743 + ABZR88_RS20165 0.14 -2.8
4,894,798 + ABZR88_RS20165 0.29 -2.3
4,894,800 + ABZR88_RS20165 0.29 -3.4
4,895,063 + -0.6
4,895,075 + -1.7
4,895,075 + -1.1

Or see this region's nucleotide sequence