Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20085 and ABZR88_RS20090 overlap by 17 nucleotides ABZR88_RS20090 and ABZR88_RS20095 are separated by 142 nucleotides
ABZR88_RS20085: ABZR88_RS20085 - glycosyltransferase, at 4,877,260 to 4,878,390
_RS20085
ABZR88_RS20090: ABZR88_RS20090 - lysylphosphatidylglycerol synthase domain-containing protein, at 4,878,374 to 4,879,345
_RS20090
ABZR88_RS20095: ABZR88_RS20095 - dienelactone hydrolase family protein, at 4,879,488 to 4,880,342
_RS20095
Position (kb)
4878
4879
4880 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4877.515 kb on + strand, within ABZR88_RS20085 at 4877.542 kb on + strand, within ABZR88_RS20085 at 4877.629 kb on - strand, within ABZR88_RS20085 at 4877.630 kb on + strand, within ABZR88_RS20085 at 4877.921 kb on + strand, within ABZR88_RS20085 at 4877.939 kb on + strand, within ABZR88_RS20085 at 4878.051 kb on + strand, within ABZR88_RS20085 at 4878.276 kb on + strand, within ABZR88_RS20085 at 4878.331 kb on + strand at 4878.370 kb on + strand at 4878.377 kb on + strand at 4878.456 kb on - strand at 4878.587 kb on + strand, within ABZR88_RS20090 at 4878.644 kb on - strand, within ABZR88_RS20090 at 4878.800 kb on - strand, within ABZR88_RS20090 at 4878.864 kb on + strand, within ABZR88_RS20090 at 4878.864 kb on + strand, within ABZR88_RS20090 at 4878.977 kb on - strand, within ABZR88_RS20090 at 4879.166 kb on + strand, within ABZR88_RS20090 at 4879.312 kb on + strand at 4879.315 kb on - strand at 4879.393 kb on + strand at 4879.521 kb on - strand at 4879.529 kb on - strand at 4879.556 kb on - strand at 4879.634 kb on + strand, within ABZR88_RS20095 at 4879.757 kb on - strand, within ABZR88_RS20095 at 4879.951 kb on - strand, within ABZR88_RS20095 at 4879.963 kb on + strand, within ABZR88_RS20095 at 4880.059 kb on - strand, within ABZR88_RS20095 at 4880.097 kb on - strand, within ABZR88_RS20095 at 4880.145 kb on - strand, within ABZR88_RS20095 at 4880.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,877,515 + ABZR88_RS20085 0.23 +0.1 4,877,542 + ABZR88_RS20085 0.25 -0.3 4,877,629 - ABZR88_RS20085 0.33 -0.2 4,877,630 + ABZR88_RS20085 0.33 -0.6 4,877,921 + ABZR88_RS20085 0.58 -0.6 4,877,939 + ABZR88_RS20085 0.60 -0.3 4,878,051 + ABZR88_RS20085 0.70 +2.9 4,878,276 + ABZR88_RS20085 0.90 -0.2 4,878,331 + -0.9 4,878,370 + -0.7 4,878,377 + -0.6 4,878,456 - +1.6 4,878,587 + ABZR88_RS20090 0.22 +0.6 4,878,644 - ABZR88_RS20090 0.28 -1.6 4,878,800 - ABZR88_RS20090 0.44 -0.8 4,878,864 + ABZR88_RS20090 0.50 -1.8 4,878,864 + ABZR88_RS20090 0.50 -0.1 4,878,977 - ABZR88_RS20090 0.62 -1.8 4,879,166 + ABZR88_RS20090 0.81 +0.4 4,879,312 + -1.1 4,879,315 - -0.7 4,879,393 + +0.4 4,879,521 - +0.5 4,879,529 - +0.4 4,879,556 - -0.1 4,879,634 + ABZR88_RS20095 0.17 -0.5 4,879,757 - ABZR88_RS20095 0.31 +0.1 4,879,951 - ABZR88_RS20095 0.54 +0.7 4,879,963 + ABZR88_RS20095 0.56 +0.2 4,880,059 - ABZR88_RS20095 0.67 +1.7 4,880,097 - ABZR88_RS20095 0.71 -0.4 4,880,145 - ABZR88_RS20095 0.77 -1.4 4,880,328 - +0.4
Or see this region's nucleotide sequence