Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS19820

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS19815 and ABZR88_RS19820 are separated by 11 nucleotidesABZR88_RS19820 and ABZR88_RS19825 are separated by 76 nucleotides ABZR88_RS19815: ABZR88_RS19815 - LD-carboxypeptidase, at 4,812,764 to 4,813,660 _RS19815 ABZR88_RS19820: ABZR88_RS19820 - DoxX family protein, at 4,813,672 to 4,814,079 _RS19820 ABZR88_RS19825: ABZR88_RS19825 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 4,814,156 to 4,815,607 _RS19825 Position (kb) 4813 4814 4815Strain fitness (log2 ratio) -1 0 1 2 3 4at 4812.725 kb on - strandat 4812.787 kb on + strandat 4812.989 kb on - strand, within ABZR88_RS19815at 4812.992 kb on - strand, within ABZR88_RS19815at 4813.033 kb on + strand, within ABZR88_RS19815at 4813.034 kb on - strand, within ABZR88_RS19815at 4813.362 kb on + strand, within ABZR88_RS19815at 4813.502 kb on - strand, within ABZR88_RS19815at 4813.527 kb on + strand, within ABZR88_RS19815at 4813.597 kb on - strandat 4813.671 kb on + strandat 4813.896 kb on + strand, within ABZR88_RS19820at 4813.897 kb on - strand, within ABZR88_RS19820at 4813.897 kb on - strand, within ABZR88_RS19820at 4813.907 kb on + strand, within ABZR88_RS19820at 4813.928 kb on + strand, within ABZR88_RS19820at 4814.087 kb on + strandat 4814.091 kb on + strandat 4814.141 kb on - strandat 4814.143 kb on - strandat 4814.154 kb on + strandat 4814.193 kb on - strandat 4814.445 kb on + strand, within ABZR88_RS19825at 4814.654 kb on - strand, within ABZR88_RS19825at 4814.779 kb on - strand, within ABZR88_RS19825at 4814.782 kb on + strand, within ABZR88_RS19825at 4814.998 kb on + strand, within ABZR88_RS19825

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,812,725 - -0.2
4,812,787 + +0.6
4,812,989 - ABZR88_RS19815 0.25 +0.4
4,812,992 - ABZR88_RS19815 0.25 -0.8
4,813,033 + ABZR88_RS19815 0.30 -0.9
4,813,034 - ABZR88_RS19815 0.30 -0.4
4,813,362 + ABZR88_RS19815 0.67 -0.2
4,813,502 - ABZR88_RS19815 0.82 +0.2
4,813,527 + ABZR88_RS19815 0.85 -0.9
4,813,597 - -1.0
4,813,671 + -1.5
4,813,896 + ABZR88_RS19820 0.55 -0.6
4,813,897 - ABZR88_RS19820 0.55 -0.2
4,813,897 - ABZR88_RS19820 0.55 -1.0
4,813,907 + ABZR88_RS19820 0.58 -0.9
4,813,928 + ABZR88_RS19820 0.63 +0.4
4,814,087 + +0.5
4,814,091 + +0.7
4,814,141 - +0.7
4,814,143 - +0.9
4,814,154 + -0.1
4,814,193 - +1.6
4,814,445 + ABZR88_RS19825 0.20 -0.7
4,814,654 - ABZR88_RS19825 0.34 +0.9
4,814,779 - ABZR88_RS19825 0.43 +1.8
4,814,782 + ABZR88_RS19825 0.43 +3.9
4,814,998 + ABZR88_RS19825 0.58 +1.3

Or see this region's nucleotide sequence