Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19290 and ABZR88_RS19295 are separated by 3 nucleotides ABZR88_RS19295 and ABZR88_RS19300 are separated by 144 nucleotides ABZR88_RS19300 and ABZR88_RS19305 are separated by 3 nucleotides
ABZR88_RS19290: ABZR88_RS19290 - beta-ketoacyl synthase chain length factor, at 4,700,808 to 4,701,866
_RS19290
ABZR88_RS19295: ABZR88_RS19295 - 3-hydroxyacyl-ACP dehydratase, at 4,701,870 to 4,702,232
_RS19295
ABZR88_RS19300: ABZR88_RS19300 - beta-ketoacyl synthase chain length factor, at 4,702,377 to 4,703,417
_RS19300
ABZR88_RS19305: ABZR88_RS19305 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 4,703,421 to 4,704,605
_RS19305
Position (kb)
4702
4703
4704 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4702.007 kb on + strand, within ABZR88_RS19295 at 4702.180 kb on + strand, within ABZR88_RS19295 at 4702.197 kb on + strand at 4702.429 kb on + strand at 4702.617 kb on - strand, within ABZR88_RS19300 at 4702.727 kb on + strand, within ABZR88_RS19300 at 4702.742 kb on + strand, within ABZR88_RS19300 at 4702.799 kb on + strand, within ABZR88_RS19300 at 4703.301 kb on + strand, within ABZR88_RS19300 at 4703.301 kb on + strand, within ABZR88_RS19300 at 4703.418 kb on - strand at 4703.422 kb on + strand at 4703.503 kb on + strand at 4703.566 kb on + strand, within ABZR88_RS19305 at 4703.590 kb on - strand, within ABZR88_RS19305 at 4703.597 kb on + strand, within ABZR88_RS19305 at 4703.747 kb on + strand, within ABZR88_RS19305 at 4703.750 kb on - strand, within ABZR88_RS19305 at 4703.895 kb on - strand, within ABZR88_RS19305 at 4703.926 kb on - strand, within ABZR88_RS19305 at 4704.060 kb on + strand, within ABZR88_RS19305 at 4704.325 kb on - strand, within ABZR88_RS19305
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,702,007 + ABZR88_RS19295 0.38 +0.4 4,702,180 + ABZR88_RS19295 0.85 -0.2 4,702,197 + +0.0 4,702,429 + +0.5 4,702,617 - ABZR88_RS19300 0.23 -2.8 4,702,727 + ABZR88_RS19300 0.34 -1.6 4,702,742 + ABZR88_RS19300 0.35 -0.7 4,702,799 + ABZR88_RS19300 0.41 -2.2 4,703,301 + ABZR88_RS19300 0.89 -0.2 4,703,301 + ABZR88_RS19300 0.89 -1.8 4,703,418 - -0.2 4,703,422 + -0.3 4,703,503 + -1.6 4,703,566 + ABZR88_RS19305 0.12 -2.5 4,703,590 - ABZR88_RS19305 0.14 -1.7 4,703,597 + ABZR88_RS19305 0.15 +0.4 4,703,747 + ABZR88_RS19305 0.28 +3.8 4,703,750 - ABZR88_RS19305 0.28 +2.4 4,703,895 - ABZR88_RS19305 0.40 -3.9 4,703,926 - ABZR88_RS19305 0.43 -0.8 4,704,060 + ABZR88_RS19305 0.54 -0.6 4,704,325 - ABZR88_RS19305 0.76 +0.4
Or see this region's nucleotide sequence