Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS19300

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS19290 and ABZR88_RS19295 are separated by 3 nucleotidesABZR88_RS19295 and ABZR88_RS19300 are separated by 144 nucleotidesABZR88_RS19300 and ABZR88_RS19305 are separated by 3 nucleotides ABZR88_RS19290: ABZR88_RS19290 - beta-ketoacyl synthase chain length factor, at 4,700,808 to 4,701,866 _RS19290 ABZR88_RS19295: ABZR88_RS19295 - 3-hydroxyacyl-ACP dehydratase, at 4,701,870 to 4,702,232 _RS19295 ABZR88_RS19300: ABZR88_RS19300 - beta-ketoacyl synthase chain length factor, at 4,702,377 to 4,703,417 _RS19300 ABZR88_RS19305: ABZR88_RS19305 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 4,703,421 to 4,704,605 _RS19305 Position (kb) 4702 4703 4704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4702.007 kb on + strand, within ABZR88_RS19295at 4702.180 kb on + strand, within ABZR88_RS19295at 4702.197 kb on + strandat 4702.429 kb on + strandat 4702.617 kb on - strand, within ABZR88_RS19300at 4702.727 kb on + strand, within ABZR88_RS19300at 4702.742 kb on + strand, within ABZR88_RS19300at 4702.799 kb on + strand, within ABZR88_RS19300at 4703.301 kb on + strand, within ABZR88_RS19300at 4703.301 kb on + strand, within ABZR88_RS19300at 4703.418 kb on - strandat 4703.422 kb on + strandat 4703.503 kb on + strandat 4703.566 kb on + strand, within ABZR88_RS19305at 4703.590 kb on - strand, within ABZR88_RS19305at 4703.597 kb on + strand, within ABZR88_RS19305at 4703.747 kb on + strand, within ABZR88_RS19305at 4703.750 kb on - strand, within ABZR88_RS19305at 4703.895 kb on - strand, within ABZR88_RS19305at 4703.926 kb on - strand, within ABZR88_RS19305at 4704.060 kb on + strand, within ABZR88_RS19305at 4704.325 kb on - strand, within ABZR88_RS19305

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,702,007 + ABZR88_RS19295 0.38 +0.4
4,702,180 + ABZR88_RS19295 0.85 -0.2
4,702,197 + +0.0
4,702,429 + +0.5
4,702,617 - ABZR88_RS19300 0.23 -2.8
4,702,727 + ABZR88_RS19300 0.34 -1.6
4,702,742 + ABZR88_RS19300 0.35 -0.7
4,702,799 + ABZR88_RS19300 0.41 -2.2
4,703,301 + ABZR88_RS19300 0.89 -0.2
4,703,301 + ABZR88_RS19300 0.89 -1.8
4,703,418 - -0.2
4,703,422 + -0.3
4,703,503 + -1.6
4,703,566 + ABZR88_RS19305 0.12 -2.5
4,703,590 - ABZR88_RS19305 0.14 -1.7
4,703,597 + ABZR88_RS19305 0.15 +0.4
4,703,747 + ABZR88_RS19305 0.28 +3.8
4,703,750 - ABZR88_RS19305 0.28 +2.4
4,703,895 - ABZR88_RS19305 0.40 -3.9
4,703,926 - ABZR88_RS19305 0.43 -0.8
4,704,060 + ABZR88_RS19305 0.54 -0.6
4,704,325 - ABZR88_RS19305 0.76 +0.4

Or see this region's nucleotide sequence