Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19065 and ABZR88_RS19070 are separated by 13 nucleotides ABZR88_RS19070 and ABZR88_RS19075 are separated by 377 nucleotides ABZR88_RS19075 and ABZR88_RS19080 are separated by 238 nucleotides ABZR88_RS19080 and ABZR88_RS19085 are separated by 11 nucleotides
ABZR88_RS19065: ABZR88_RS19065 - 1-hydroxycarotenoid 3,4-desaturase CrtD, at 4,657,134 to 4,658,603
_RS19065
ABZR88_RS19070: ABZR88_RS19070 - hypothetical protein, at 4,658,617 to 4,658,805
_RS19070
ABZR88_RS19075: ABZR88_RS19075 - LysR substrate-binding domain-containing protein, at 4,659,183 to 4,660,076
_RS19075
ABZR88_RS19080: ABZR88_RS19080 - hypothetical protein, at 4,660,315 to 4,660,734
_RS19080
ABZR88_RS19085: ABZR88_RS19085 - phage holin family protein, at 4,660,746 to 4,661,102
_RS19085
Position (kb) 4659
4660
4661 Strain fitness (log2 ratio) -2
-1
0
1 at 4658.227 kb on + strand, within ABZR88_RS19065 at 4658.409 kb on + strand, within ABZR88_RS19065 at 4658.410 kb on - strand, within ABZR88_RS19065 at 4658.414 kb on - strand, within ABZR88_RS19065 at 4658.891 kb on - strand at 4658.919 kb on - strand at 4659.438 kb on - strand, within ABZR88_RS19075 at 4659.689 kb on + strand, within ABZR88_RS19075 at 4659.712 kb on - strand, within ABZR88_RS19075 at 4659.744 kb on + strand, within ABZR88_RS19075 at 4659.978 kb on - strand, within ABZR88_RS19075 at 4659.981 kb on - strand, within ABZR88_RS19075 at 4660.076 kb on + strand at 4660.140 kb on + strand at 4660.548 kb on + strand, within ABZR88_RS19080 at 4660.638 kb on + strand, within ABZR88_RS19080 at 4660.716 kb on + strand at 4660.717 kb on - strand at 4660.742 kb on + strand at 4660.743 kb on - strand at 4660.815 kb on - strand, within ABZR88_RS19085 at 4660.932 kb on + strand, within ABZR88_RS19085 at 4660.953 kb on - strand, within ABZR88_RS19085 at 4660.958 kb on + strand, within ABZR88_RS19085
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,658,227 + ABZR88_RS19065 0.74 -1.0 4,658,409 + ABZR88_RS19065 0.87 +0.7 4,658,410 - ABZR88_RS19065 0.87 +1.0 4,658,414 - ABZR88_RS19065 0.87 +0.4 4,658,891 - -1.0 4,658,919 - -0.4 4,659,438 - ABZR88_RS19075 0.29 -1.6 4,659,689 + ABZR88_RS19075 0.57 -1.2 4,659,712 - ABZR88_RS19075 0.59 +0.3 4,659,744 + ABZR88_RS19075 0.63 -1.4 4,659,978 - ABZR88_RS19075 0.89 -2.0 4,659,981 - ABZR88_RS19075 0.89 -1.0 4,660,076 + -2.4 4,660,140 + -0.7 4,660,548 + ABZR88_RS19080 0.55 -0.4 4,660,638 + ABZR88_RS19080 0.77 +0.2 4,660,716 + +0.0 4,660,717 - +0.3 4,660,742 + -1.0 4,660,743 - +0.3 4,660,815 - ABZR88_RS19085 0.19 +0.7 4,660,932 + ABZR88_RS19085 0.52 -1.0 4,660,953 - ABZR88_RS19085 0.58 -0.2 4,660,958 + ABZR88_RS19085 0.59 -0.2
Or see this region's nucleotide sequence