Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS18315

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS18305 and ABZR88_RS18310 are separated by 160 nucleotidesABZR88_RS18310 and ABZR88_RS18315 are separated by 100 nucleotidesABZR88_RS18315 and ABZR88_RS18320 are separated by 256 nucleotides ABZR88_RS18305: ABZR88_RS18305 - NADP-dependent malic enzyme, at 4,462,609 to 4,464,897 _RS18305 ABZR88_RS18310: ABZR88_RS18310 - Holliday junction branch migration protein RuvA, at 4,465,058 to 4,465,642 _RS18310 ABZR88_RS18315: ABZR88_RS18315 - cell surface protein SprA, at 4,465,743 to 4,472,744 _RS18315 ABZR88_RS18320: ABZR88_RS18320 - hypothetical protein, at 4,473,001 to 4,474,800 _RS18320 Position (kb) 4465 4466 4467 4468 4469 4470 4471 4472 4473Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4464.916 kb on + strandat 4464.996 kb on - strandat 4464.999 kb on - strandat 4465.067 kb on + strandat 4465.451 kb on - strand, within ABZR88_RS18310at 4465.630 kb on + strandat 4465.658 kb on + strandat 4465.778 kb on + strandat 4465.813 kb on - strandat 4465.846 kb on - strandat 4465.908 kb on + strandat 4465.961 kb on + strandat 4465.962 kb on - strandat 4466.296 kb on - strandat 4466.346 kb on - strandat 4466.393 kb on - strandat 4466.768 kb on + strand, within ABZR88_RS18315at 4466.855 kb on - strand, within ABZR88_RS18315at 4466.855 kb on - strand, within ABZR88_RS18315at 4466.943 kb on + strand, within ABZR88_RS18315at 4467.035 kb on + strand, within ABZR88_RS18315at 4467.075 kb on - strand, within ABZR88_RS18315at 4467.088 kb on - strand, within ABZR88_RS18315at 4467.115 kb on + strand, within ABZR88_RS18315at 4467.151 kb on + strand, within ABZR88_RS18315at 4467.428 kb on + strand, within ABZR88_RS18315at 4467.461 kb on + strand, within ABZR88_RS18315at 4467.466 kb on + strand, within ABZR88_RS18315at 4467.550 kb on - strand, within ABZR88_RS18315at 4467.601 kb on - strand, within ABZR88_RS18315at 4467.724 kb on - strand, within ABZR88_RS18315at 4467.792 kb on - strand, within ABZR88_RS18315at 4467.866 kb on + strand, within ABZR88_RS18315at 4467.902 kb on + strand, within ABZR88_RS18315at 4468.073 kb on - strand, within ABZR88_RS18315at 4468.394 kb on - strand, within ABZR88_RS18315at 4468.448 kb on - strand, within ABZR88_RS18315at 4468.562 kb on + strand, within ABZR88_RS18315at 4468.640 kb on + strand, within ABZR88_RS18315at 4468.645 kb on - strand, within ABZR88_RS18315at 4468.993 kb on - strand, within ABZR88_RS18315at 4469.098 kb on + strand, within ABZR88_RS18315at 4469.249 kb on + strand, within ABZR88_RS18315at 4469.443 kb on + strand, within ABZR88_RS18315at 4469.444 kb on - strand, within ABZR88_RS18315at 4469.554 kb on + strand, within ABZR88_RS18315at 4469.555 kb on - strand, within ABZR88_RS18315at 4469.593 kb on - strand, within ABZR88_RS18315at 4469.749 kb on - strand, within ABZR88_RS18315at 4469.799 kb on - strand, within ABZR88_RS18315at 4469.835 kb on + strand, within ABZR88_RS18315at 4469.857 kb on - strand, within ABZR88_RS18315at 4470.019 kb on - strand, within ABZR88_RS18315at 4470.084 kb on - strand, within ABZR88_RS18315at 4470.357 kb on - strand, within ABZR88_RS18315at 4470.407 kb on - strand, within ABZR88_RS18315at 4470.425 kb on - strand, within ABZR88_RS18315at 4470.549 kb on - strand, within ABZR88_RS18315at 4470.649 kb on - strand, within ABZR88_RS18315at 4470.733 kb on - strand, within ABZR88_RS18315at 4470.751 kb on - strand, within ABZR88_RS18315at 4470.809 kb on + strand, within ABZR88_RS18315at 4470.884 kb on + strand, within ABZR88_RS18315at 4470.884 kb on + strand, within ABZR88_RS18315at 4470.903 kb on + strand, within ABZR88_RS18315at 4470.905 kb on + strand, within ABZR88_RS18315at 4471.105 kb on - strand, within ABZR88_RS18315at 4471.130 kb on + strand, within ABZR88_RS18315at 4471.185 kb on + strand, within ABZR88_RS18315at 4471.435 kb on - strand, within ABZR88_RS18315at 4471.731 kb on + strand, within ABZR88_RS18315at 4471.801 kb on + strand, within ABZR88_RS18315at 4472.334 kb on - strandat 4472.516 kb on - strandat 4472.617 kb on - strandat 4472.637 kb on - strandat 4472.653 kb on - strandat 4472.921 kb on - strandat 4473.227 kb on + strand, within ABZR88_RS18320at 4473.227 kb on + strand, within ABZR88_RS18320at 4473.268 kb on - strand, within ABZR88_RS18320at 4473.374 kb on - strand, within ABZR88_RS18320at 4473.448 kb on - strand, within ABZR88_RS18320at 4473.591 kb on + strand, within ABZR88_RS18320at 4473.655 kb on - strand, within ABZR88_RS18320at 4473.731 kb on + strand, within ABZR88_RS18320

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,464,916 + +0.2
4,464,996 - -0.2
4,464,999 - +0.0
4,465,067 + -1.1
4,465,451 - ABZR88_RS18310 0.67 +0.3
4,465,630 + +0.0
4,465,658 + +1.3
4,465,778 + -2.2
4,465,813 - -3.5
4,465,846 - -1.9
4,465,908 + -3.8
4,465,961 + -1.4
4,465,962 - -2.5
4,466,296 - -2.1
4,466,346 - -1.9
4,466,393 - -1.3
4,466,768 + ABZR88_RS18315 0.15 -1.1
4,466,855 - ABZR88_RS18315 0.16 -2.5
4,466,855 - ABZR88_RS18315 0.16 -0.5
4,466,943 + ABZR88_RS18315 0.17 -1.1
4,467,035 + ABZR88_RS18315 0.18 -0.4
4,467,075 - ABZR88_RS18315 0.19 -3.3
4,467,088 - ABZR88_RS18315 0.19 -3.5
4,467,115 + ABZR88_RS18315 0.20 -1.7
4,467,151 + ABZR88_RS18315 0.20 -1.1
4,467,428 + ABZR88_RS18315 0.24 -1.2
4,467,461 + ABZR88_RS18315 0.25 -1.4
4,467,466 + ABZR88_RS18315 0.25 -2.0
4,467,550 - ABZR88_RS18315 0.26 -2.1
4,467,601 - ABZR88_RS18315 0.27 -1.3
4,467,724 - ABZR88_RS18315 0.28 -1.7
4,467,792 - ABZR88_RS18315 0.29 +0.3
4,467,866 + ABZR88_RS18315 0.30 -1.3
4,467,902 + ABZR88_RS18315 0.31 -1.5
4,468,073 - ABZR88_RS18315 0.33 -1.4
4,468,394 - ABZR88_RS18315 0.38 -1.5
4,468,448 - ABZR88_RS18315 0.39 -1.1
4,468,562 + ABZR88_RS18315 0.40 -0.3
4,468,640 + ABZR88_RS18315 0.41 -2.6
4,468,645 - ABZR88_RS18315 0.41 -1.1
4,468,993 - ABZR88_RS18315 0.46 -0.7
4,469,098 + ABZR88_RS18315 0.48 -0.7
4,469,249 + ABZR88_RS18315 0.50 -3.1
4,469,443 + ABZR88_RS18315 0.53 -1.1
4,469,444 - ABZR88_RS18315 0.53 -1.6
4,469,554 + ABZR88_RS18315 0.54 -0.1
4,469,555 - ABZR88_RS18315 0.54 -0.3
4,469,593 - ABZR88_RS18315 0.55 -1.2
4,469,749 - ABZR88_RS18315 0.57 -2.1
4,469,799 - ABZR88_RS18315 0.58 -0.7
4,469,835 + ABZR88_RS18315 0.58 -3.9
4,469,857 - ABZR88_RS18315 0.59 -1.7
4,470,019 - ABZR88_RS18315 0.61 +0.7
4,470,084 - ABZR88_RS18315 0.62 +0.3
4,470,357 - ABZR88_RS18315 0.66 -0.7
4,470,407 - ABZR88_RS18315 0.67 -1.8
4,470,425 - ABZR88_RS18315 0.67 -2.3
4,470,549 - ABZR88_RS18315 0.69 -1.7
4,470,649 - ABZR88_RS18315 0.70 -2.1
4,470,733 - ABZR88_RS18315 0.71 -1.1
4,470,751 - ABZR88_RS18315 0.72 -3.5
4,470,809 + ABZR88_RS18315 0.72 -3.0
4,470,884 + ABZR88_RS18315 0.73 +0.3
4,470,884 + ABZR88_RS18315 0.73 -1.6
4,470,903 + ABZR88_RS18315 0.74 -1.8
4,470,905 + ABZR88_RS18315 0.74 -4.1
4,471,105 - ABZR88_RS18315 0.77 -2.9
4,471,130 + ABZR88_RS18315 0.77 -2.3
4,471,185 + ABZR88_RS18315 0.78 -2.1
4,471,435 - ABZR88_RS18315 0.81 -0.7
4,471,731 + ABZR88_RS18315 0.86 -1.3
4,471,801 + ABZR88_RS18315 0.87 -1.1
4,472,334 - -1.3
4,472,516 - -2.3
4,472,617 - -1.1
4,472,637 - -1.5
4,472,653 - -0.3
4,472,921 - -1.1
4,473,227 + ABZR88_RS18320 0.13 -0.9
4,473,227 + ABZR88_RS18320 0.13 +0.4
4,473,268 - ABZR88_RS18320 0.15 +0.5
4,473,374 - ABZR88_RS18320 0.21 -0.7
4,473,448 - ABZR88_RS18320 0.25 +0.3
4,473,591 + ABZR88_RS18320 0.33 -0.1
4,473,655 - ABZR88_RS18320 0.36 -0.6
4,473,731 + ABZR88_RS18320 0.41 +0.2

Or see this region's nucleotide sequence