Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS18305 and ABZR88_RS18310 are separated by 160 nucleotides ABZR88_RS18310 and ABZR88_RS18315 are separated by 100 nucleotides ABZR88_RS18315 and ABZR88_RS18320 are separated by 256 nucleotides
ABZR88_RS18305: ABZR88_RS18305 - NADP-dependent malic enzyme, at 4,462,609 to 4,464,897
_RS18305
ABZR88_RS18310: ABZR88_RS18310 - Holliday junction branch migration protein RuvA, at 4,465,058 to 4,465,642
_RS18310
ABZR88_RS18315: ABZR88_RS18315 - cell surface protein SprA, at 4,465,743 to 4,472,744
_RS18315
ABZR88_RS18320: ABZR88_RS18320 - hypothetical protein, at 4,473,001 to 4,474,800
_RS18320
Position (kb)
4465
4466
4467
4468
4469
4470
4471
4472
4473 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4464.916 kb on + strand at 4464.996 kb on - strand at 4464.999 kb on - strand at 4465.067 kb on + strand at 4465.451 kb on - strand, within ABZR88_RS18310 at 4465.630 kb on + strand at 4465.658 kb on + strand at 4465.778 kb on + strand at 4465.813 kb on - strand at 4465.846 kb on - strand at 4465.908 kb on + strand at 4465.961 kb on + strand at 4465.962 kb on - strand at 4466.296 kb on - strand at 4466.346 kb on - strand at 4466.393 kb on - strand at 4466.768 kb on + strand, within ABZR88_RS18315 at 4466.855 kb on - strand, within ABZR88_RS18315 at 4466.855 kb on - strand, within ABZR88_RS18315 at 4466.943 kb on + strand, within ABZR88_RS18315 at 4467.035 kb on + strand, within ABZR88_RS18315 at 4467.075 kb on - strand, within ABZR88_RS18315 at 4467.088 kb on - strand, within ABZR88_RS18315 at 4467.115 kb on + strand, within ABZR88_RS18315 at 4467.151 kb on + strand, within ABZR88_RS18315 at 4467.428 kb on + strand, within ABZR88_RS18315 at 4467.461 kb on + strand, within ABZR88_RS18315 at 4467.466 kb on + strand, within ABZR88_RS18315 at 4467.550 kb on - strand, within ABZR88_RS18315 at 4467.601 kb on - strand, within ABZR88_RS18315 at 4467.724 kb on - strand, within ABZR88_RS18315 at 4467.792 kb on - strand, within ABZR88_RS18315 at 4467.866 kb on + strand, within ABZR88_RS18315 at 4467.902 kb on + strand, within ABZR88_RS18315 at 4468.073 kb on - strand, within ABZR88_RS18315 at 4468.394 kb on - strand, within ABZR88_RS18315 at 4468.448 kb on - strand, within ABZR88_RS18315 at 4468.562 kb on + strand, within ABZR88_RS18315 at 4468.640 kb on + strand, within ABZR88_RS18315 at 4468.645 kb on - strand, within ABZR88_RS18315 at 4468.993 kb on - strand, within ABZR88_RS18315 at 4469.098 kb on + strand, within ABZR88_RS18315 at 4469.249 kb on + strand, within ABZR88_RS18315 at 4469.443 kb on + strand, within ABZR88_RS18315 at 4469.444 kb on - strand, within ABZR88_RS18315 at 4469.554 kb on + strand, within ABZR88_RS18315 at 4469.555 kb on - strand, within ABZR88_RS18315 at 4469.593 kb on - strand, within ABZR88_RS18315 at 4469.749 kb on - strand, within ABZR88_RS18315 at 4469.799 kb on - strand, within ABZR88_RS18315 at 4469.835 kb on + strand, within ABZR88_RS18315 at 4469.857 kb on - strand, within ABZR88_RS18315 at 4470.019 kb on - strand, within ABZR88_RS18315 at 4470.084 kb on - strand, within ABZR88_RS18315 at 4470.357 kb on - strand, within ABZR88_RS18315 at 4470.407 kb on - strand, within ABZR88_RS18315 at 4470.425 kb on - strand, within ABZR88_RS18315 at 4470.549 kb on - strand, within ABZR88_RS18315 at 4470.649 kb on - strand, within ABZR88_RS18315 at 4470.733 kb on - strand, within ABZR88_RS18315 at 4470.751 kb on - strand, within ABZR88_RS18315 at 4470.809 kb on + strand, within ABZR88_RS18315 at 4470.884 kb on + strand, within ABZR88_RS18315 at 4470.884 kb on + strand, within ABZR88_RS18315 at 4470.903 kb on + strand, within ABZR88_RS18315 at 4470.905 kb on + strand, within ABZR88_RS18315 at 4471.105 kb on - strand, within ABZR88_RS18315 at 4471.130 kb on + strand, within ABZR88_RS18315 at 4471.185 kb on + strand, within ABZR88_RS18315 at 4471.435 kb on - strand, within ABZR88_RS18315 at 4471.731 kb on + strand, within ABZR88_RS18315 at 4471.801 kb on + strand, within ABZR88_RS18315 at 4472.334 kb on - strand at 4472.516 kb on - strand at 4472.617 kb on - strand at 4472.637 kb on - strand at 4472.653 kb on - strand at 4472.921 kb on - strand at 4473.227 kb on + strand, within ABZR88_RS18320 at 4473.227 kb on + strand, within ABZR88_RS18320 at 4473.268 kb on - strand, within ABZR88_RS18320 at 4473.374 kb on - strand, within ABZR88_RS18320 at 4473.448 kb on - strand, within ABZR88_RS18320 at 4473.591 kb on + strand, within ABZR88_RS18320 at 4473.655 kb on - strand, within ABZR88_RS18320 at 4473.731 kb on + strand, within ABZR88_RS18320
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,464,916 + +0.2 4,464,996 - -0.2 4,464,999 - +0.0 4,465,067 + -1.1 4,465,451 - ABZR88_RS18310 0.67 +0.3 4,465,630 + +0.0 4,465,658 + +1.3 4,465,778 + -2.2 4,465,813 - -3.5 4,465,846 - -1.9 4,465,908 + -3.8 4,465,961 + -1.4 4,465,962 - -2.5 4,466,296 - -2.1 4,466,346 - -1.9 4,466,393 - -1.3 4,466,768 + ABZR88_RS18315 0.15 -1.1 4,466,855 - ABZR88_RS18315 0.16 -2.5 4,466,855 - ABZR88_RS18315 0.16 -0.5 4,466,943 + ABZR88_RS18315 0.17 -1.1 4,467,035 + ABZR88_RS18315 0.18 -0.4 4,467,075 - ABZR88_RS18315 0.19 -3.3 4,467,088 - ABZR88_RS18315 0.19 -3.5 4,467,115 + ABZR88_RS18315 0.20 -1.7 4,467,151 + ABZR88_RS18315 0.20 -1.1 4,467,428 + ABZR88_RS18315 0.24 -1.2 4,467,461 + ABZR88_RS18315 0.25 -1.4 4,467,466 + ABZR88_RS18315 0.25 -2.0 4,467,550 - ABZR88_RS18315 0.26 -2.1 4,467,601 - ABZR88_RS18315 0.27 -1.3 4,467,724 - ABZR88_RS18315 0.28 -1.7 4,467,792 - ABZR88_RS18315 0.29 +0.3 4,467,866 + ABZR88_RS18315 0.30 -1.3 4,467,902 + ABZR88_RS18315 0.31 -1.5 4,468,073 - ABZR88_RS18315 0.33 -1.4 4,468,394 - ABZR88_RS18315 0.38 -1.5 4,468,448 - ABZR88_RS18315 0.39 -1.1 4,468,562 + ABZR88_RS18315 0.40 -0.3 4,468,640 + ABZR88_RS18315 0.41 -2.6 4,468,645 - ABZR88_RS18315 0.41 -1.1 4,468,993 - ABZR88_RS18315 0.46 -0.7 4,469,098 + ABZR88_RS18315 0.48 -0.7 4,469,249 + ABZR88_RS18315 0.50 -3.1 4,469,443 + ABZR88_RS18315 0.53 -1.1 4,469,444 - ABZR88_RS18315 0.53 -1.6 4,469,554 + ABZR88_RS18315 0.54 -0.1 4,469,555 - ABZR88_RS18315 0.54 -0.3 4,469,593 - ABZR88_RS18315 0.55 -1.2 4,469,749 - ABZR88_RS18315 0.57 -2.1 4,469,799 - ABZR88_RS18315 0.58 -0.7 4,469,835 + ABZR88_RS18315 0.58 -3.9 4,469,857 - ABZR88_RS18315 0.59 -1.7 4,470,019 - ABZR88_RS18315 0.61 +0.7 4,470,084 - ABZR88_RS18315 0.62 +0.3 4,470,357 - ABZR88_RS18315 0.66 -0.7 4,470,407 - ABZR88_RS18315 0.67 -1.8 4,470,425 - ABZR88_RS18315 0.67 -2.3 4,470,549 - ABZR88_RS18315 0.69 -1.7 4,470,649 - ABZR88_RS18315 0.70 -2.1 4,470,733 - ABZR88_RS18315 0.71 -1.1 4,470,751 - ABZR88_RS18315 0.72 -3.5 4,470,809 + ABZR88_RS18315 0.72 -3.0 4,470,884 + ABZR88_RS18315 0.73 +0.3 4,470,884 + ABZR88_RS18315 0.73 -1.6 4,470,903 + ABZR88_RS18315 0.74 -1.8 4,470,905 + ABZR88_RS18315 0.74 -4.1 4,471,105 - ABZR88_RS18315 0.77 -2.9 4,471,130 + ABZR88_RS18315 0.77 -2.3 4,471,185 + ABZR88_RS18315 0.78 -2.1 4,471,435 - ABZR88_RS18315 0.81 -0.7 4,471,731 + ABZR88_RS18315 0.86 -1.3 4,471,801 + ABZR88_RS18315 0.87 -1.1 4,472,334 - -1.3 4,472,516 - -2.3 4,472,617 - -1.1 4,472,637 - -1.5 4,472,653 - -0.3 4,472,921 - -1.1 4,473,227 + ABZR88_RS18320 0.13 -0.9 4,473,227 + ABZR88_RS18320 0.13 +0.4 4,473,268 - ABZR88_RS18320 0.15 +0.5 4,473,374 - ABZR88_RS18320 0.21 -0.7 4,473,448 - ABZR88_RS18320 0.25 +0.3 4,473,591 + ABZR88_RS18320 0.33 -0.1 4,473,655 - ABZR88_RS18320 0.36 -0.6 4,473,731 + ABZR88_RS18320 0.41 +0.2
Or see this region's nucleotide sequence