Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17845

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17835 and ABZR88_RS17840 are separated by 114 nucleotidesABZR88_RS17840 and ABZR88_RS17845 are separated by 48 nucleotidesABZR88_RS17845 and ABZR88_RS17850 are separated by 52 nucleotidesABZR88_RS17850 and ABZR88_RS17855 are separated by 133 nucleotides ABZR88_RS17835: ABZR88_RS17835 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,355,663 to 4,356,478 _RS17835 ABZR88_RS17840: ABZR88_RS17840 - RluA family pseudouridine synthase, at 4,356,593 to 4,357,324 _RS17840 ABZR88_RS17845: ABZR88_RS17845 - hypothetical protein, at 4,357,373 to 4,358,032 _RS17845 ABZR88_RS17850: ABZR88_RS17850 - GNAT family N-acetyltransferase, at 4,358,085 to 4,358,759 _RS17850 ABZR88_RS17855: ABZR88_RS17855 - DUF4397 domain-containing protein, at 4,358,893 to 4,359,612 _RS17855 Position (kb) 4357 4358 4359Strain fitness (log2 ratio) -2 -1 0 1 2at 4356.476 kb on + strandat 4356.482 kb on + strandat 4356.558 kb on - strandat 4356.558 kb on - strandat 4356.560 kb on + strandat 4356.588 kb on + strandat 4356.830 kb on - strand, within ABZR88_RS17840at 4356.977 kb on + strand, within ABZR88_RS17840at 4357.072 kb on + strand, within ABZR88_RS17840at 4357.205 kb on - strand, within ABZR88_RS17840at 4357.217 kb on - strand, within ABZR88_RS17840at 4357.349 kb on + strandat 4357.487 kb on - strand, within ABZR88_RS17845at 4357.884 kb on - strand, within ABZR88_RS17845at 4357.890 kb on + strand, within ABZR88_RS17845at 4357.977 kb on + strandat 4357.977 kb on + strandat 4357.977 kb on + strandat 4357.977 kb on + strandat 4357.978 kb on - strandat 4357.981 kb on + strandat 4357.999 kb on - strandat 4358.017 kb on + strandat 4358.042 kb on - strandat 4358.098 kb on + strandat 4358.385 kb on - strand, within ABZR88_RS17850at 4358.611 kb on + strand, within ABZR88_RS17850at 4358.637 kb on - strand, within ABZR88_RS17850at 4358.668 kb on + strand, within ABZR88_RS17850at 4358.668 kb on + strand, within ABZR88_RS17850at 4358.669 kb on - strand, within ABZR88_RS17850at 4358.757 kb on + strandat 4358.804 kb on - strandat 4359.026 kb on + strand, within ABZR88_RS17855

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,356,476 + +0.9
4,356,482 + -0.1
4,356,558 - +0.1
4,356,558 - +0.5
4,356,560 + -1.2
4,356,588 + +0.4
4,356,830 - ABZR88_RS17840 0.32 -1.8
4,356,977 + ABZR88_RS17840 0.52 -0.8
4,357,072 + ABZR88_RS17840 0.65 -1.6
4,357,205 - ABZR88_RS17840 0.84 +0.7
4,357,217 - ABZR88_RS17840 0.85 +0.6
4,357,349 + -0.8
4,357,487 - ABZR88_RS17845 0.17 -0.2
4,357,884 - ABZR88_RS17845 0.77 -0.8
4,357,890 + ABZR88_RS17845 0.78 -1.7
4,357,977 + +0.6
4,357,977 + -2.3
4,357,977 + -2.7
4,357,977 + -0.1
4,357,978 - -0.0
4,357,981 + +2.4
4,357,999 - -0.0
4,358,017 + +0.2
4,358,042 - -0.3
4,358,098 + -0.1
4,358,385 - ABZR88_RS17850 0.44 -0.5
4,358,611 + ABZR88_RS17850 0.78 +0.2
4,358,637 - ABZR88_RS17850 0.82 -1.1
4,358,668 + ABZR88_RS17850 0.86 +0.2
4,358,668 + ABZR88_RS17850 0.86 -0.1
4,358,669 - ABZR88_RS17850 0.87 +2.4
4,358,757 + +0.8
4,358,804 - -1.3
4,359,026 + ABZR88_RS17855 0.18 +0.9

Or see this region's nucleotide sequence