Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17835 and ABZR88_RS17840 are separated by 114 nucleotides ABZR88_RS17840 and ABZR88_RS17845 are separated by 48 nucleotides ABZR88_RS17845 and ABZR88_RS17850 are separated by 52 nucleotides ABZR88_RS17850 and ABZR88_RS17855 are separated by 133 nucleotides
ABZR88_RS17835: ABZR88_RS17835 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,355,663 to 4,356,478
_RS17835
ABZR88_RS17840: ABZR88_RS17840 - RluA family pseudouridine synthase, at 4,356,593 to 4,357,324
_RS17840
ABZR88_RS17845: ABZR88_RS17845 - hypothetical protein, at 4,357,373 to 4,358,032
_RS17845
ABZR88_RS17850: ABZR88_RS17850 - GNAT family N-acetyltransferase, at 4,358,085 to 4,358,759
_RS17850
ABZR88_RS17855: ABZR88_RS17855 - DUF4397 domain-containing protein, at 4,358,893 to 4,359,612
_RS17855
Position (kb)
4357
4358
4359 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4356.476 kb on + strand at 4356.482 kb on + strand at 4356.558 kb on - strand at 4356.558 kb on - strand at 4356.560 kb on + strand at 4356.588 kb on + strand at 4356.830 kb on - strand, within ABZR88_RS17840 at 4356.977 kb on + strand, within ABZR88_RS17840 at 4357.072 kb on + strand, within ABZR88_RS17840 at 4357.205 kb on - strand, within ABZR88_RS17840 at 4357.217 kb on - strand, within ABZR88_RS17840 at 4357.349 kb on + strand at 4357.487 kb on - strand, within ABZR88_RS17845 at 4357.884 kb on - strand, within ABZR88_RS17845 at 4357.890 kb on + strand, within ABZR88_RS17845 at 4357.977 kb on + strand at 4357.977 kb on + strand at 4357.977 kb on + strand at 4357.977 kb on + strand at 4357.978 kb on - strand at 4357.981 kb on + strand at 4357.999 kb on - strand at 4358.017 kb on + strand at 4358.042 kb on - strand at 4358.098 kb on + strand at 4358.385 kb on - strand, within ABZR88_RS17850 at 4358.611 kb on + strand, within ABZR88_RS17850 at 4358.637 kb on - strand, within ABZR88_RS17850 at 4358.668 kb on + strand, within ABZR88_RS17850 at 4358.668 kb on + strand, within ABZR88_RS17850 at 4358.669 kb on - strand, within ABZR88_RS17850 at 4358.757 kb on + strand at 4358.804 kb on - strand at 4359.026 kb on + strand, within ABZR88_RS17855
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,356,476 + +0.9 4,356,482 + -0.1 4,356,558 - +0.1 4,356,558 - +0.5 4,356,560 + -1.2 4,356,588 + +0.4 4,356,830 - ABZR88_RS17840 0.32 -1.8 4,356,977 + ABZR88_RS17840 0.52 -0.8 4,357,072 + ABZR88_RS17840 0.65 -1.6 4,357,205 - ABZR88_RS17840 0.84 +0.7 4,357,217 - ABZR88_RS17840 0.85 +0.6 4,357,349 + -0.8 4,357,487 - ABZR88_RS17845 0.17 -0.2 4,357,884 - ABZR88_RS17845 0.77 -0.8 4,357,890 + ABZR88_RS17845 0.78 -1.7 4,357,977 + +0.6 4,357,977 + -2.3 4,357,977 + -2.7 4,357,977 + -0.1 4,357,978 - -0.0 4,357,981 + +2.4 4,357,999 - -0.0 4,358,017 + +0.2 4,358,042 - -0.3 4,358,098 + -0.1 4,358,385 - ABZR88_RS17850 0.44 -0.5 4,358,611 + ABZR88_RS17850 0.78 +0.2 4,358,637 - ABZR88_RS17850 0.82 -1.1 4,358,668 + ABZR88_RS17850 0.86 +0.2 4,358,668 + ABZR88_RS17850 0.86 -0.1 4,358,669 - ABZR88_RS17850 0.87 +2.4 4,358,757 + +0.8 4,358,804 - -1.3 4,359,026 + ABZR88_RS17855 0.18 +0.9
Or see this region's nucleotide sequence