Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17500

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17490 and ABZR88_RS17495 are separated by 127 nucleotidesABZR88_RS17495 and ABZR88_RS17500 are separated by 32 nucleotidesABZR88_RS17500 and ABZR88_RS17505 are separated by 110 nucleotides ABZR88_RS17490: ABZR88_RS17490 - dTDP-4-dehydrorhamnose reductase, at 4,278,948 to 4,279,808 _RS17490 ABZR88_RS17495: ABZR88_RS17495 - DUF3467 domain-containing protein, at 4,279,936 to 4,280,247 _RS17495 ABZR88_RS17500: ABZR88_RS17500 - nucleotide sugar dehydrogenase, at 4,280,280 to 4,281,599 _RS17500 ABZR88_RS17505: ABZR88_RS17505 - lipopolysaccharide biosynthesis protein, at 4,281,710 to 4,283,071 _RS17505 Position (kb) 4280 4281 4282Strain fitness (log2 ratio) -2 -1 0 1 2at 4279.830 kb on - strandat 4280.042 kb on - strand, within ABZR88_RS17495at 4280.331 kb on + strandat 4280.414 kb on - strand, within ABZR88_RS17500at 4280.458 kb on + strand, within ABZR88_RS17500at 4280.459 kb on - strand, within ABZR88_RS17500at 4280.540 kb on + strand, within ABZR88_RS17500at 4280.540 kb on + strand, within ABZR88_RS17500at 4280.598 kb on + strand, within ABZR88_RS17500at 4280.658 kb on - strand, within ABZR88_RS17500at 4280.982 kb on - strand, within ABZR88_RS17500at 4281.043 kb on - strand, within ABZR88_RS17500at 4281.070 kb on - strand, within ABZR88_RS17500at 4281.315 kb on - strand, within ABZR88_RS17500at 4281.324 kb on - strand, within ABZR88_RS17500at 4281.376 kb on + strand, within ABZR88_RS17500at 4281.422 kb on + strand, within ABZR88_RS17500at 4281.444 kb on + strand, within ABZR88_RS17500at 4281.445 kb on - strand, within ABZR88_RS17500at 4281.465 kb on + strand, within ABZR88_RS17500at 4281.467 kb on + strand, within ABZR88_RS17500at 4281.488 kb on - strandat 4281.526 kb on + strandat 4281.527 kb on - strandat 4281.527 kb on - strandat 4281.889 kb on + strand, within ABZR88_RS17505at 4281.932 kb on - strand, within ABZR88_RS17505at 4281.973 kb on + strand, within ABZR88_RS17505at 4282.093 kb on + strand, within ABZR88_RS17505at 4282.168 kb on + strand, within ABZR88_RS17505at 4282.198 kb on + strand, within ABZR88_RS17505at 4282.206 kb on + strand, within ABZR88_RS17505at 4282.262 kb on - strand, within ABZR88_RS17505at 4282.407 kb on + strand, within ABZR88_RS17505at 4282.426 kb on - strand, within ABZR88_RS17505

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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4,279,830 - +0.0
4,280,042 - ABZR88_RS17495 0.34 -0.4
4,280,331 + -1.7
4,280,414 - ABZR88_RS17500 0.10 -1.9
4,280,458 + ABZR88_RS17500 0.13 +1.2
4,280,459 - ABZR88_RS17500 0.14 -1.6
4,280,540 + ABZR88_RS17500 0.20 -1.0
4,280,540 + ABZR88_RS17500 0.20 -0.6
4,280,598 + ABZR88_RS17500 0.24 -0.0
4,280,658 - ABZR88_RS17500 0.29 -2.0
4,280,982 - ABZR88_RS17500 0.53 -1.3
4,281,043 - ABZR88_RS17500 0.58 -1.0
4,281,070 - ABZR88_RS17500 0.60 -0.3
4,281,315 - ABZR88_RS17500 0.78 -1.6
4,281,324 - ABZR88_RS17500 0.79 -0.3
4,281,376 + ABZR88_RS17500 0.83 -0.0
4,281,422 + ABZR88_RS17500 0.87 +0.5
4,281,444 + ABZR88_RS17500 0.88 +0.0
4,281,445 - ABZR88_RS17500 0.88 -0.3
4,281,465 + ABZR88_RS17500 0.90 +0.0
4,281,467 + ABZR88_RS17500 0.90 -0.3
4,281,488 - -0.8
4,281,526 + -1.3
4,281,527 - -2.1
4,281,527 - +0.0
4,281,889 + ABZR88_RS17505 0.13 +1.8
4,281,932 - ABZR88_RS17505 0.16 +1.0
4,281,973 + ABZR88_RS17505 0.19 +1.4
4,282,093 + ABZR88_RS17505 0.28 +0.6
4,282,168 + ABZR88_RS17505 0.34 +0.5
4,282,198 + ABZR88_RS17505 0.36 +1.3
4,282,206 + ABZR88_RS17505 0.36 +1.5
4,282,262 - ABZR88_RS17505 0.41 +1.5
4,282,407 + ABZR88_RS17505 0.51 +1.3
4,282,426 - ABZR88_RS17505 0.53 +1.7

Or see this region's nucleotide sequence