Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17490 and ABZR88_RS17495 are separated by 127 nucleotides ABZR88_RS17495 and ABZR88_RS17500 are separated by 32 nucleotides ABZR88_RS17500 and ABZR88_RS17505 are separated by 110 nucleotides
ABZR88_RS17490: ABZR88_RS17490 - dTDP-4-dehydrorhamnose reductase, at 4,278,948 to 4,279,808
_RS17490
ABZR88_RS17495: ABZR88_RS17495 - DUF3467 domain-containing protein, at 4,279,936 to 4,280,247
_RS17495
ABZR88_RS17500: ABZR88_RS17500 - nucleotide sugar dehydrogenase, at 4,280,280 to 4,281,599
_RS17500
ABZR88_RS17505: ABZR88_RS17505 - lipopolysaccharide biosynthesis protein, at 4,281,710 to 4,283,071
_RS17505
Position (kb)
4280
4281
4282 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4279.830 kb on - strand at 4280.042 kb on - strand, within ABZR88_RS17495 at 4280.331 kb on + strand at 4280.414 kb on - strand, within ABZR88_RS17500 at 4280.458 kb on + strand, within ABZR88_RS17500 at 4280.459 kb on - strand, within ABZR88_RS17500 at 4280.540 kb on + strand, within ABZR88_RS17500 at 4280.540 kb on + strand, within ABZR88_RS17500 at 4280.598 kb on + strand, within ABZR88_RS17500 at 4280.658 kb on - strand, within ABZR88_RS17500 at 4280.982 kb on - strand, within ABZR88_RS17500 at 4281.043 kb on - strand, within ABZR88_RS17500 at 4281.070 kb on - strand, within ABZR88_RS17500 at 4281.315 kb on - strand, within ABZR88_RS17500 at 4281.324 kb on - strand, within ABZR88_RS17500 at 4281.376 kb on + strand, within ABZR88_RS17500 at 4281.422 kb on + strand, within ABZR88_RS17500 at 4281.444 kb on + strand, within ABZR88_RS17500 at 4281.445 kb on - strand, within ABZR88_RS17500 at 4281.465 kb on + strand, within ABZR88_RS17500 at 4281.467 kb on + strand, within ABZR88_RS17500 at 4281.488 kb on - strand at 4281.526 kb on + strand at 4281.527 kb on - strand at 4281.527 kb on - strand at 4281.889 kb on + strand, within ABZR88_RS17505 at 4281.932 kb on - strand, within ABZR88_RS17505 at 4281.973 kb on + strand, within ABZR88_RS17505 at 4282.093 kb on + strand, within ABZR88_RS17505 at 4282.168 kb on + strand, within ABZR88_RS17505 at 4282.198 kb on + strand, within ABZR88_RS17505 at 4282.206 kb on + strand, within ABZR88_RS17505 at 4282.262 kb on - strand, within ABZR88_RS17505 at 4282.407 kb on + strand, within ABZR88_RS17505 at 4282.426 kb on - strand, within ABZR88_RS17505
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,279,830 - +0.0 4,280,042 - ABZR88_RS17495 0.34 -0.4 4,280,331 + -1.7 4,280,414 - ABZR88_RS17500 0.10 -1.9 4,280,458 + ABZR88_RS17500 0.13 +1.2 4,280,459 - ABZR88_RS17500 0.14 -1.6 4,280,540 + ABZR88_RS17500 0.20 -1.0 4,280,540 + ABZR88_RS17500 0.20 -0.6 4,280,598 + ABZR88_RS17500 0.24 -0.0 4,280,658 - ABZR88_RS17500 0.29 -2.0 4,280,982 - ABZR88_RS17500 0.53 -1.3 4,281,043 - ABZR88_RS17500 0.58 -1.0 4,281,070 - ABZR88_RS17500 0.60 -0.3 4,281,315 - ABZR88_RS17500 0.78 -1.6 4,281,324 - ABZR88_RS17500 0.79 -0.3 4,281,376 + ABZR88_RS17500 0.83 -0.0 4,281,422 + ABZR88_RS17500 0.87 +0.5 4,281,444 + ABZR88_RS17500 0.88 +0.0 4,281,445 - ABZR88_RS17500 0.88 -0.3 4,281,465 + ABZR88_RS17500 0.90 +0.0 4,281,467 + ABZR88_RS17500 0.90 -0.3 4,281,488 - -0.8 4,281,526 + -1.3 4,281,527 - -2.1 4,281,527 - +0.0 4,281,889 + ABZR88_RS17505 0.13 +1.8 4,281,932 - ABZR88_RS17505 0.16 +1.0 4,281,973 + ABZR88_RS17505 0.19 +1.4 4,282,093 + ABZR88_RS17505 0.28 +0.6 4,282,168 + ABZR88_RS17505 0.34 +0.5 4,282,198 + ABZR88_RS17505 0.36 +1.3 4,282,206 + ABZR88_RS17505 0.36 +1.5 4,282,262 - ABZR88_RS17505 0.41 +1.5 4,282,407 + ABZR88_RS17505 0.51 +1.3 4,282,426 - ABZR88_RS17505 0.53 +1.7
Or see this region's nucleotide sequence