Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17390 and ABZR88_RS17395 are separated by 115 nucleotides ABZR88_RS17395 and ABZR88_RS17400 are separated by 6 nucleotides ABZR88_RS17400 and ABZR88_RS17405 are separated by 197 nucleotides
ABZR88_RS17390: ABZR88_RS17390 - BamA/TamA family outer membrane protein, at 4,258,549 to 4,260,798
_RS17390
ABZR88_RS17395: ABZR88_RS17395 - aspartyl protease family protein, at 4,260,914 to 4,261,348
_RS17395
ABZR88_RS17400: ABZR88_RS17400 - YdeI family protein, at 4,261,355 to 4,261,948
_RS17400
ABZR88_RS17405: ABZR88_RS17405 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 4,262,146 to 4,264,104
_RS17405
Position (kb) 4260
4261
4262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4259.975 kb on + strand, within ABZR88_RS17390 at 4260.012 kb on + strand, within ABZR88_RS17390 at 4260.012 kb on + strand, within ABZR88_RS17390 at 4260.096 kb on + strand, within ABZR88_RS17390 at 4260.507 kb on - strand, within ABZR88_RS17390 at 4260.627 kb on + strand at 4260.989 kb on + strand, within ABZR88_RS17395 at 4261.003 kb on + strand, within ABZR88_RS17395 at 4261.424 kb on + strand, within ABZR88_RS17400 at 4261.425 kb on - strand, within ABZR88_RS17400 at 4261.542 kb on - strand, within ABZR88_RS17400 at 4261.695 kb on - strand, within ABZR88_RS17400 at 4261.956 kb on + strand at 4261.958 kb on + strand at 4261.959 kb on - strand at 4261.959 kb on - strand at 4262.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,259,975 + ABZR88_RS17390 0.63 -0.9 4,260,012 + ABZR88_RS17390 0.65 -0.6 4,260,012 + ABZR88_RS17390 0.65 +0.7 4,260,096 + ABZR88_RS17390 0.69 -0.8 4,260,507 - ABZR88_RS17390 0.87 -1.5 4,260,627 + -1.9 4,260,989 + ABZR88_RS17395 0.17 -1.5 4,261,003 + ABZR88_RS17395 0.20 -0.0 4,261,424 + ABZR88_RS17400 0.12 +2.2 4,261,425 - ABZR88_RS17400 0.12 +1.1 4,261,542 - ABZR88_RS17400 0.31 +0.4 4,261,695 - ABZR88_RS17400 0.57 -0.4 4,261,956 + -0.6 4,261,958 + -0.1 4,261,959 - -0.8 4,261,959 - +0.2 4,262,113 - -0.0
Or see this region's nucleotide sequence