Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17345 and ABZR88_RS17350 are separated by 155 nucleotides ABZR88_RS17350 and ABZR88_RS17355 are separated by 210 nucleotides ABZR88_RS17355 and ABZR88_RS17360 are separated by 1 nucleotides ABZR88_RS17360 and ABZR88_RS17365 are separated by 138 nucleotides
ABZR88_RS17345: ABZR88_RS17345 - glycosyltransferase family 1 protein, at 4,243,830 to 4,244,933
_RS17345
ABZR88_RS17350: ABZR88_RS17350 - hypothetical protein, at 4,245,089 to 4,245,307
_RS17350
ABZR88_RS17355: ABZR88_RS17355 - sensor histidine kinase, at 4,245,518 to 4,246,531
_RS17355
ABZR88_RS17360: ABZR88_RS17360 - LytTR family DNA-binding domain-containing protein, at 4,246,533 to 4,247,273
_RS17360
ABZR88_RS17365: ABZR88_RS17365 - GIY-YIG nuclease family protein, at 4,247,412 to 4,247,708
_RS17365
Position (kb) 4245
4246
4247 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4244.566 kb on + strand, within ABZR88_RS17345 at 4244.791 kb on - strand, within ABZR88_RS17345 at 4244.869 kb on + strand at 4244.938 kb on - strand at 4244.938 kb on - strand at 4245.107 kb on - strand at 4245.160 kb on + strand, within ABZR88_RS17350 at 4245.226 kb on - strand, within ABZR88_RS17350 at 4245.229 kb on + strand, within ABZR88_RS17350 at 4245.473 kb on - strand at 4245.473 kb on - strand at 4245.477 kb on + strand at 4245.614 kb on - strand at 4245.729 kb on - strand, within ABZR88_RS17355 at 4246.084 kb on - strand, within ABZR88_RS17355 at 4246.116 kb on - strand, within ABZR88_RS17355 at 4246.172 kb on + strand, within ABZR88_RS17355 at 4246.173 kb on - strand, within ABZR88_RS17355 at 4246.270 kb on + strand, within ABZR88_RS17355 at 4246.339 kb on - strand, within ABZR88_RS17355 at 4246.435 kb on - strand at 4246.502 kb on + strand at 4246.522 kb on - strand at 4246.583 kb on - strand at 4246.590 kb on + strand at 4246.675 kb on + strand, within ABZR88_RS17360 at 4246.783 kb on - strand, within ABZR88_RS17360 at 4246.964 kb on + strand, within ABZR88_RS17360 at 4247.013 kb on - strand, within ABZR88_RS17360 at 4247.041 kb on - strand, within ABZR88_RS17360 at 4247.139 kb on - strand, within ABZR88_RS17360 at 4247.225 kb on + strand at 4247.400 kb on + strand at 4247.401 kb on - strand at 4247.475 kb on - strand, within ABZR88_RS17365
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,244,566 + ABZR88_RS17345 0.67 -0.8 4,244,791 - ABZR88_RS17345 0.87 -1.8 4,244,869 + +0.4 4,244,938 - +0.1 4,244,938 - -0.2 4,245,107 - -0.3 4,245,160 + ABZR88_RS17350 0.32 +0.8 4,245,226 - ABZR88_RS17350 0.63 -0.1 4,245,229 + ABZR88_RS17350 0.64 -1.3 4,245,473 - -0.3 4,245,473 - -3.0 4,245,477 + -0.9 4,245,614 - -2.2 4,245,729 - ABZR88_RS17355 0.21 -0.7 4,246,084 - ABZR88_RS17355 0.56 -1.0 4,246,116 - ABZR88_RS17355 0.59 -0.9 4,246,172 + ABZR88_RS17355 0.64 -1.3 4,246,173 - ABZR88_RS17355 0.65 -0.3 4,246,270 + ABZR88_RS17355 0.74 -1.5 4,246,339 - ABZR88_RS17355 0.81 +0.4 4,246,435 - -1.2 4,246,502 + -2.3 4,246,522 - -1.4 4,246,583 - +0.7 4,246,590 + -0.8 4,246,675 + ABZR88_RS17360 0.19 -1.1 4,246,783 - ABZR88_RS17360 0.34 +1.2 4,246,964 + ABZR88_RS17360 0.58 -1.1 4,247,013 - ABZR88_RS17360 0.65 -0.3 4,247,041 - ABZR88_RS17360 0.69 -0.5 4,247,139 - ABZR88_RS17360 0.82 -2.4 4,247,225 + +0.2 4,247,400 + +0.2 4,247,401 - -0.6 4,247,475 - ABZR88_RS17365 0.21 -0.1
Or see this region's nucleotide sequence