Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17335 and ABZR88_RS17340 are separated by 1 nucleotides ABZR88_RS17340 and ABZR88_RS17345 overlap by 8 nucleotides ABZR88_RS17345 and ABZR88_RS17350 are separated by 155 nucleotides ABZR88_RS17350 and ABZR88_RS17355 are separated by 210 nucleotides
ABZR88_RS17335: ABZR88_RS17335 - glycosyltransferase family 2 protein, at 4,242,145 to 4,243,080
_RS17335
ABZR88_RS17340: ABZR88_RS17340 - glycosyltransferase, at 4,243,082 to 4,243,837
_RS17340
ABZR88_RS17345: ABZR88_RS17345 - glycosyltransferase family 1 protein, at 4,243,830 to 4,244,933
_RS17345
ABZR88_RS17350: ABZR88_RS17350 - hypothetical protein, at 4,245,089 to 4,245,307
_RS17350
ABZR88_RS17355: ABZR88_RS17355 - sensor histidine kinase, at 4,245,518 to 4,246,531
_RS17355
Position (kb) 4243
4244
4245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4242.897 kb on + strand, within ABZR88_RS17335 at 4243.152 kb on - strand at 4243.172 kb on + strand, within ABZR88_RS17340 at 4243.448 kb on + strand, within ABZR88_RS17340 at 4243.875 kb on + strand at 4243.971 kb on + strand, within ABZR88_RS17345 at 4244.157 kb on + strand, within ABZR88_RS17345 at 4244.184 kb on + strand, within ABZR88_RS17345 at 4244.184 kb on + strand, within ABZR88_RS17345 at 4244.566 kb on + strand, within ABZR88_RS17345 at 4244.791 kb on - strand, within ABZR88_RS17345 at 4244.869 kb on + strand at 4244.938 kb on - strand at 4244.938 kb on - strand at 4245.107 kb on - strand at 4245.160 kb on + strand, within ABZR88_RS17350 at 4245.226 kb on - strand, within ABZR88_RS17350 at 4245.229 kb on + strand, within ABZR88_RS17350 at 4245.473 kb on - strand at 4245.473 kb on - strand at 4245.477 kb on + strand at 4245.614 kb on - strand at 4245.729 kb on - strand, within ABZR88_RS17355
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 4,242,897 + ABZR88_RS17335 0.80 +0.2 4,243,152 - -1.6 4,243,172 + ABZR88_RS17340 0.12 -0.3 4,243,448 + ABZR88_RS17340 0.48 -0.3 4,243,875 + +1.8 4,243,971 + ABZR88_RS17345 0.13 -1.1 4,244,157 + ABZR88_RS17345 0.30 -0.8 4,244,184 + ABZR88_RS17345 0.32 -0.5 4,244,184 + ABZR88_RS17345 0.32 -1.9 4,244,566 + ABZR88_RS17345 0.67 -0.8 4,244,791 - ABZR88_RS17345 0.87 -1.8 4,244,869 + +0.4 4,244,938 - +0.1 4,244,938 - -0.2 4,245,107 - -0.3 4,245,160 + ABZR88_RS17350 0.32 +0.8 4,245,226 - ABZR88_RS17350 0.63 -0.1 4,245,229 + ABZR88_RS17350 0.64 -1.3 4,245,473 - -0.3 4,245,473 - -3.0 4,245,477 + -0.9 4,245,614 - -2.2 4,245,729 - ABZR88_RS17355 0.21 -0.7
Or see this region's nucleotide sequence